RetrogeneDB ID:
retro_ecab_332
Organism:
Horse ( Equus_caballus )
Location:
15:58831873-58832243 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.38 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_332
TGGATCCCGCAAGGAAGGGTGGCAAGAAGAAGGAGAGTGTTCTGCTGTCAATGAGATAGT
GACCGGAGAATACACCATCAACAACCACAAGTGCGTCATGGAGTGGGCTCAAGAAGGGTG
ACCCTCAGACAGTCAAAGAGATCCAGAAATTTGCCATGAAGAAGGTGGGAAGCCCAGGTA
TACTCATTGACGCAGGCTCAGCAAAGCTGTCTAGGCCTAATAAATAAGGAATGTCCCATT
CAGTATCCACATACAGTTGTCCAGAAAACGCAATGAGGATGAAGATTCACCACACAAGCT
CTGTATGTTCGTTACCTCTGTACCCGTCACCACTTTCAAAAACCAACACAGTGCAGATGA
GAACCAATCG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
WLPLRRVARRRRA-AAINEVVTREYTINIHKRI-HGVG-FKKRAPRALKEIRKFAMKEMGTPDVRIDT-RLNKAVWAKGIRNVPYRIRVRLSRKRNEDED
W.P..RVARRRR...A.NE.VT.EYTIN.HK...HGVG..KK..P...KEI.KFAMK..G.P...ID..RL.KAV.A..IRNVP..I...LSRKRNEDED
Retrocopy
WIPQGRVARRRRV\SAVNEIVTGEYTINNHKCV/HGVG/LKKGDPQTVKEIQKFAMKKVGSPGILIDA/RLSKAV*A**IRNVPFSIHIQLSRKRNEDED


Parental protein
SPNKLYTLVTYVPVTTFKNLQTVNVDEN
SP.KL...VT.VPVTTFKN.........
Retrocopy
SPHKLCMFVTSVPVTTFKNQHSADENQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide