RetrogeneDB ID:
retro_ecab_334
Organism:
Horse ( Equus_caballus )
Location:
15:69813273-69813533 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.05 %
Coverage:
61.27 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
TOMM22
Parental gene aliases:
No gene alias available
Parental gene description:
translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:HGNC Symbol;Acc:18002]

Genomic region (view in browser)





>retro_ecab_334
CCACTGCGCCACCAGCCGGCCCCCAGAGCCACTTTTGATCTCTCCCTGTTTGAGGCTCAA
AAAATGTGCAGGTTTTCCAGAACAGCCTTGTGGGTTTCAGCCACTTCCTTTACGACCCTG
GCTCTTCCTGTCGTCTTCCAGAATGAAAAGCTGCAAAGGCAACAACAGCGGTCACTGCAA
CAGTGCAGATGCTTCTAGGGCACAACACAGGGCCTTCGGGAGGCACACCAGGTGCTCCAC
CTTCACTTCCTGGAAAGATC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQ-RQILLGPNTGLSGGMPGALPSLPGKL
P.R...A..ATFDLSLF.AQKM.RFSR.ALW...TSF..L.LPVVF..EKLQ..QQ..LQQ..Q.LLG.NTG.SGG.PGA.PSLPGK.
Retrocopy
PLRHQPAPRATFDLSLFEAQKMCRFSRTALWVSATSFTTLALPVVFQNEKLQRQQQRSLQQ/VQMLLGHNTGPSGGTPGAPPSLPGKI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide