RetrogeneDB ID:
retro_ecab_337
Organism:
Horse ( Equus_caballus )
Location:
15:74105955-74106279 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.25 %
Coverage:
64.88 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
TPT1
Parental gene aliases:
No gene alias available
Parental gene description:
tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:12022]

Genomic region (view in browser)





>retro_ecab_337
GAGATCACTAATGGGCTGTGCCTTGCCAGGCTGGGAAGATGATCAGCAGGACAGAGGGTA
ACAATGATGTCTTGCTCATTGGTCTGGATGCCTCTGCTGAAAGTCCAGAAGGAAAAGAAG
TATATACTGCAGTAATCACTAGTGTTGATATAGTCGTGAAGTATCAATTACAAGAAACAA
GCTCAAAAATGAATCTTACAAAAAGTGCCTCAAAGACTACATAACATCAATCAAAGGTAA
GAATGAATAATAAAAACTAAAAAGATTAAAACCTTTTATGATTCTACTGTAGAACAAATC
AACTATTTTCTTACTAATTTCAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EIADGLCLE-VEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETS-FTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFM-TGA
EI..GLCL....GKM.SRTEGN.D..LIG..ASAE.PEG......VIT.VDIV....LQETS....E.YKK..KDY..SIKGK.E.....R.KPFM....
Retrocopy
EITNGLCLA/QAGKMISRTEGNNDVLLIGLDASAESPEGKEVYTAVITSVDIVVKYQLQETS/LKNESYKKCLKDYITSIKGKNE**KLKRLKPFM/DST


Parental protein
AEQIKHILANFK
.EQI...L.NFK
Retrocopy
VEQINYFLTNFK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide