RetrogeneDB ID:
retro_ecab_338
Organism:
Horse ( Equus_caballus )
Location:
15:76392359-76392974 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
54.33 %
Coverage:
62.28 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
RDH13
Parental gene aliases:
No gene alias available
Parental gene description:
retinol dehydrogenase 13 (all-trans/9-cis) [Source:HGNC Symbol;Acc:19978]
Genomic region (view in browser)
>retro_ecab_338
TTGAAGGAAGAGCCTAGACTGGACGTCTTGATCAATAACGCAGGCATCTTTCAGTGCCCT
TATATGAAGACCGAAGACGGGTTTGAGATGCAGTTTGGAGTGAACCATCTGGGGCACTTC
CTGCTCACCAATCTTCTCCTTGGACTCCTCAAAAGTTCAGCTCCCAGCAGGATTGTGGTA
GTTTCTTCCAAACTGTATAAATATGGAGACATCAACTTTGAAGACTTGAACAGTGAACAA
AGCTATAATAAAAGCTTTTGTTATAGTCGGAGCAAACTGGCGAACATTCTTTTTACCAGA
GAACTAGCCCGCCGCTTGGAAGGCACAAACGTTACCGTCAATGTGTTACACCCTGGTATT
GTGCGGACTAATCTTGGGAGACACATACACATCCCACTGTTGGTGAAACCACTTTTCAAT
TTGGTATCATGGGCTTTTTTCAAAACTCCAGCAGAAGGTGCCCAGACTTCAATTTATTTA
GCATCATCACCTGAAGTAGAAGGCGTATCAGGAAAGTACTTTGGGGATTGTAAAGAAGAG
GAACTATTGCCCAAAGCTATGGATGAGTCTGTTGCAAGAAAACTCTGGGATATCAGTGAA
GTCATGGTTGGCATA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 2.73 |
| SRP021940_cerebellum | 8.02 |
| SRP021940_embryo | 5.58 |
| SRP021940_placental_villous | 3.85 |
| SRP021940_synovial_membrane | 3.23 |
| SRP021940_testis | 6.53 |
Parental protein coverage
Changes in the retrocopy sequence
