RetrogeneDB ID:
retro_ecab_339
Organism:
Horse ( Equus_caballus )
Location:
15:77612321-77613166 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.49 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_339
ATGAGGAGGAAAAGGAATACATTCCAAGCAAGGGAACAGGACAAAACCCCAGAAAAAGAA
CTAAATGAAACAGAAATAAGCAGTCTACCTGACAAAGAGTTCAAACAAAAACTCATAAGG
ATGCTCACTGATATTGGGAGAAGAGTGGAGGAACACAGTGAGAATGTCAACAAAGAATTG
TAAAATATAAAAAAAGAACCAATTAAAAATGAAGAATACAATACTGGAAATGAAAAATTC
ACTAGATGGACTCAATAACAGAGTAGATGATACAGAAGAACAGATCAGTGAGCTGGATGA
AAGACCACAGGAAATCATCCAAGCTGAACAGACAAAAGAAAAAAGAATTAAAAAAGAATG
AGAACAGTGAAAGGGGACTCTGGGACAATATTAAGCACACTAACATTAGTATTATAGGTG
TCCCAGAAGGTGAAGAGAGAGACAAAGAGGCAGAGAATGTATTTGATGAAAGAGTGGCTG
AAAACTTTCCTAACCTAAGGAAGGAAAGAGACATCCAAATACAGGAAGCACAGAGAGCAC
CAAACAAGATGAACACCAAGAGGCCCACATCAAGACACATTATAACTTAAATGTCCAAAA
CTAAAGATAAAGAGAAAATCCTAAATGAAACAAGGGAAAGCCAACAAGTGAAATACAAAG
CAAAGCCCCTAAAGCTATCAGCAGACTTCTCATCTGAAACCCTACAGGCTAGAAGAGAGT
GGCGTGACATATTTAAAGTGCTGAAAGGAAAAAACCTACAGCCAAGAATACTCTATCCAG
AAAGGTTATAATTCAGAATGGAAGGAGAGAGAAAGAGCTTCCCAGACAAGCAAAAATTAA
AGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENI-KKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLD
MRR.RN.F.AR.QDKTPEKELNET....LPDKEFKQK.IRML.D.GRR...HSENVNKEL.NI.KK.Q..MK.TIL.MKNSL.GLN.RVDDTEE.I..LD
Retrocopy
MRRKRNTFQAREQDKTPEKELNETEISSLPDKEFKQKLIRMLTDIGRRVEEHSENVNKEL*NI\KKNQLKMKNTILEMKNSLDGLNNRVDDTEEQISELD


Parental protein
EKLEEI-SQVNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMS
E...EI.S..N.........N......LWDNIKH.NI.II.VP.GEER.K..EN.F.E...ENFPNLRKE.DIQ.QE.QRAPNK...KRPT..HII..MS
Retrocopy
ERPQEI\SKLNRXXXXXXXXNENSERGLWDNIKHTNISIIGVPEGEERDKEAENVFDERVAENFPNLRKERDIQIQEAQRAPNKMNTKRPTSRHIIT*MS


Parental protein
KIKDKERILKAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEGEIKRFPDKQNVKE
K.KDKE.IL...RE...V.YK.KP..LSADFS.ETLQA.REW.DIFKVLKGKNLQPRI.YP.R..FRMEGE.K.FPDKQ..KE
Retrocopy
KTKDKEKILNETRESQQVKYKAKPLKLSADFSSETLQARREWRDIFKVLKGKNLQPRILYPERL*FRMEGERKSFPDKQKLKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide