RetrogeneDB ID:
retro_ecab_340
Organism:
Horse ( Equus_caballus )
Location:
15:84311225-84311670 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.65 %
Coverage:
68.84 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
SYPL1
Parental gene aliases:
No gene alias available
Parental gene description:
synaptophysin-like 1 [Source:HGNC Symbol;Acc:11507]

Genomic region (view in browser)





>retro_ecab_340
GAATATTCTTTTTCTGCGTAATTCAGTGTCACCTTTGAGGCCTAGTTTTCCTCTCCTGCA
TCACTGTGCTTGTGCTTTATATTGGTCAATTGACCTTATATTGGGGAGAGCGGAAAACTT
TCCACAACTGACCTTGATATTTTCATTGCTACTTTTTTAAGGTTGACAAGAATTTCATCT
TGTGCCACAGCTCTCACAGATATCGAAACAGCCATGGGTGAAAACATTGTTCAGAATTTC
TACCTTGTTAGCAGTAAAGAATAATGGTTCATTTGGCTCTATCTCTATTACTTCTCTAAA
TGTAACTGTAATTTTTGACTTTGTGAATATGATATCTTCAGGAGGAAATGCTTGGTTTGT
ATATATAGAATCAAATATATTACACAGACCATCAAATGAGACCACTGCCCAAGGTCAAAT
ATGTATTTTACCTTCTACAGGAATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DYSSSAQFYVTFAV-FVFLYCMAALLLYLGYTSLY-RDSRKLTMTDFVITLVATFLWLVSTSAWAKALTDIKIATGPNIVR-ELGPCNQ-RVTCHFSVT-
.YS.SA.F.VTF....VFL.C...L.LY.G...LY...S.KL..TD..I...ATFL.L...S..A.ALTDI..A.G.NIV..E..PC.Q.R...H.....
Retrocopy
EYSFSA*FSVTFEA/LVFLSCITVLVLYIGQLTLY\GESGKLSTTDLDI-FIATFLRLTRISSCATALTDIETAMGENIVQ/EFLPC*Q*RIMVHLALS/


Parental protein
SMGSLNVSVIFGFLNMILWGGNAWFVYKETS-LHSPSNTSASHGQGGVPPPSGI
S..SLNV.VIF.F.NMI..GGNAWFVY.E...LH.PSN.....GQ....P..GI
Retrocopy
SITSLNVTVIFDFVNMISSGGNAWFVYIESNILHRPSNETTAQGQICILPSTGI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide