RetrogeneDB ID:
retro_ecab_341
Organism:
Horse ( Equus_caballus )
Location:
15:88054484-88054977 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.9 %
Coverage:
97.67 %
Frameshifts:
5
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_ecab_341
TTTCCAATCATCATCTGCGCTGGAAGCATCACCAAGATGAAGATATTTGTAAAACCTTTA
GGGGAAGCCCATCATTCTTGAGGTGGAAACATTGGATACAATAAAAAATGTAAAGGCCAA
GATCCAGGATGAGGAAGGACTCTCTCTCGATCAGCAAAGACTGATCTTACTGGCAAGAAA
CTGGAGATGGACATGCTTTGCCTGACTGTAGCATTCAAAGGAGTCCACTGTTTACCTTGT
GTTGAGACTGTGGTGGAACTAAGAAAAGGAGGAAGTCTTATACCACTCCCAAGAAGAATA
AGCATAAGAAAAAGAAGTTTAAGCTGGCTGGCCTGAAATACTACAAGGTGAATGAGAATG
GCAAAATTAGTCTCCTTTGTTGGGAGTGCTCCTCAGATAAATGTGGTGCTGGAATTTTAT
GGCCAGCCACTTTGACAGATGTTATTATGACAAATGTTGCTTTACCTATTGTTTCAATAA
ACCAGAAGACAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FQSAICGATAAKMQIFV-KT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-AGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKS
F...IC.....KM.IFV.KT.L.GK.I.LEVE..DTI.NVKAKIQD.EG...DQQRLI...GK.LE.DG..L.D..IQ..S.L.......GG.KKR..KS
Retrocopy
FPIIICAGSITKMKIFV/KT/L*GKPIILEVETLDTIKNVKAKIQDEEGLSLDQQRLIL/TGKKLE/DGHALPDCSIQR-SPLFTLC*DCGGTKKRR-KS


Parental protein
YTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGV-FMASHFDRHYCGKCCLTYCFNKPEDK
YTTPKKNKHK.KK.KLA.LKYYKV.ENGKIS.L..EC.SD.CGAG..FMASHFDR.Y..KCC.TYCFNKPEDK
Retrocopy
YTTPKKNKHKKKKFKLAGLKYYKVNENGKISLLCWECSSDKCGAGI/FMASHFDRCYYDKCCFTYCFNKPEDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide