RetrogeneDB ID:
retro_ecab_342
Organism:
Horse ( Equus_caballus )
Location:
15:1177155-1177744 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
88.44 %
Coverage:
54.62 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_342
GAGCCATATGGCACATTAATCCTAAGTGGACCAGGTGGCTGCAGAAGCTGTGTAGTCCCT
GCTGCTTTGGCTGTGATTGCCTTGTCCTCAACCAGGGCTATCTCTCAGAGGCAGGGGCCA
GCCTGGTGGACCAAAAACTGGAACTCAACATTGTGCCCCGTACAAAGGTAGTATACCTGG
CCAGTGAGACTTTCAACTATAGTGCCATTGACCGAGTGAAGTCCAAGGGCAAGCAGCTTG
CACTGGAGAAGGTGCCAAAACTTGGGCAGCAGTTTAACCACATTGGGCTACGGCTGAGGC
CAAAGGTTAGTTCATTCCTGCTCTTTGTTGAAGGCTACAAAGATGCAGATTACTGGCTAC
AGTGTTTTGAAGCAGAACCTCTCCCTGAGAACACTAACTGGCAACTACTGCTTCAGTTTG
AGCAGTTGTGGTACTGGATTACATCATCCGCAATACTGATCGAGGCAGTGACAACTGGCT
GATTAAATACCACTGTCCAATGGATAGTTCTAGCTCTCGGGACACAGACTGGGTGGTGGT
GAAGGAGCCTGTTATCAAGGTGGCTGCCATAGACAATGGGCTGGCTTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.12
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EPYG-HLNPKWTKWLQKLCCPCCFGRDCLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKSRGKRLALEKVPKVGARFNRIG--L
EPYG.H.NPKWT.WLQKLC.PCCFG.DCLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKS.GK.LALEKVPK.G..FN.IG..L
Retrocopy
EPYG/HINPKWTRWLQKLCSPCCFGCDCLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKSKGKQLALEKVPKLGQQFNHIGLRL


Parental protein
PPKVGSFQLFVEGYKDADYWLRRFEAEPLPENTNRQLLLQFERL-VVLDYIIRNTDRGNDNWLIKYDCPMDSSSSRDTDWVVVKEPVIKVAAIDNGLAF
.PKV.SF.LFVEGYKDADYWL..FEAEPLPENTN.QLLLQFE.L.VVLDYIIRNTDRG.DNWLIKY.CPMDSSSSRDTDWVVVKEPVIKVAAIDNGLAF
Retrocopy
RPKVSSFLLFVEGYKDADYWLQCFEAEPLPENTNWQLLLQFEQL/VVLDYIIRNTDRGSDNWLIKYHCPMDSSSSRDTDWVVVKEPVIKVAAIDNGLAF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide