RetrogeneDB ID:
retro_ecab_344
Organism:
Horse ( Equus_caballus )
Location:
15:2111986-2112290 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.47 %
Coverage:
66.89 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_344
ACTAACACGCTTATTTTTAACAAATACATTTCTTTGGTAGAAAATTACATTGAAGAACAG
CTGCTGGAGGGGATTCCTGGATTTAACATGGCGGCTTTCACAACAGCAGTACGGCACCAT
CAAGATGAAGTGGCTGGTGACATACTCAACGTGCAGCTCACGTTTATGGATTTTCTGGCT
TTTAAAGAAATGTTTCTGGAATACAGAGCAGAAAAAAGAAGGCCAGGGACTGGACCTAAG
CAGTGGTTTAGTGGCGACTTCATTGTGTAAATCTTCTTCTATGCCAGCTTATAGTAGTTC
AATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TYTPIFNEYISLVEKYIEEQLVERIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAE-KEGRGLDLSSGLVVTSLCKSSSVPASQN
T.T.IFN.YISLVE.YIEEQL.E.IPGFNMAAFTT...HH.DEVAGDI....LTF.DFLAFKEMFL.YRAE.KEG.GLDLSSGLV.TSLCKSSS.PA...
Retrocopy
TNTLIFNKYISLVENYIEEQLLEGIPGFNMAAFTTAVRHHQDEVAGDILNVQLTFMDFLAFKEMFLEYRAE\KEGQGLDLSSGLVATSLCKSSSMPAYSS


Parental protein
SL
S.
Retrocopy
SI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide