RetrogeneDB ID:
retro_ecab_346
Organism:
Horse ( Equus_caballus )
Location:
15:28061973-28062567 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
57.43 %
Coverage:
97.07 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_346
CAAAAGAATCAAACAGAAATTCTGGAGCTGAAGAACTCAGTAAATGAGATGAAGAATGTA
TTAGAAAGCATCGGAAATAGAGCAGACTATATGGAAGAGAGAATCAGTGAGCTCGAGGAT
AGAAATCTAGAAAAGATTCAGATAGAAGAGGAGAGATAGCTAAGGTTTTTAAAAAATGAA
GCAACTCTACAAGAACTATCCAACATCATTAGAAAAGGCAACATAAGGATAATGGGATCC
CAGAAAGACAGGAGATGGAGAAGGGAGCAGAGGGCTTTTTTAAAGAAATAATAGCTGAGA
ACTTCCCCAAACTGGGGAAAGAACTGGATGTAAAATTCCACAAAGCTAATAGAACCTCTA
ATTATCTCAGTGCAAAAAGACCTTCTCTGAGACACTTTATTGTAAAACTGTCAAAAATCA
ATGGTAAAGAAAGAATTTTAAAGGCAGTCAGGGAAAAAAAACGACAGTAACTTACAAAGA
ATCTCCAATAGGCTATCAGCAGATTTCTTAGGAGAAACTCTACAGGCCTGGAGAGAATGA
AATGACCTACTTAAAATATTGAAAAATAAAAACTGTCAGCCAAGAATACTCTAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.15
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.13
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKNQSKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLEDRNIEILQIEEERELRLKRNEEILQEVSKSIRKGNIRLI-GIPEGEEKDKGAESLFKEIIA
.KNQ...LE.KN...E.K..L.S..NRAD..EE.IS.LEDRN.E..QIEEER.LR...NE..LQE.S..IRKGNIR...GIPE..E..KGAE..FKEIIA
Retrocopy
QKNQTEILELKNSVNEMKNVLESIGNRADYMEERISELEDRNLEKIQIEEER*LRFLKNEATLQELSNIIRKGNIRIM/GIPERQEMEKGAEGFFKEIIA


Parental protein
GNFPNLGKELEIQVKEAKRIPNYITVKRHSPRHIVEKLAKVNDKEKVLRAANKKQQ-IITYKGAPI-RLSADFSTETLQARREWSDIFKALKDKNLQPRI
.NFP.LGKEL......A.R..NY...KR.S.RH...KL.K.N.KE..L.A.........TYK..PI.RLSADF..ETLQA.RE..D..K.LK.KN.QPRI
Retrocopy
ENFPKLGKELDVKFHKANRTSNYLSAKRPSLRHFIVKLSKINGKERILKAVRXXXR/TVTYKESPI/RLSADFLGETLQAWRE*NDLLKILKNKNCQPRI


Parental protein
LY
LY
Retrocopy
LY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide