RetrogeneDB ID:
retro_ecab_348
Organism:
Horse ( Equus_caballus )
Location:
15:39207864-39208224 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.77 %
Coverage:
78.38 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
PIGP
Parental gene aliases:
No gene alias available
Parental gene description:
phosphatidylinositol glycan anchor biosynthesis, class P [Source:HGNC Symbol;Acc:3046]

Genomic region (view in browser)





>retro_ecab_348
TTGTTCTTAAGCTCTCAGTTTGACTTCACACTGTATCTCCGGTGGGCTTCCATTCCTGAA
TCTTGGCTAAACTCCTTAGGCTTAACTTTTTGGCCTCAAAAATACTGGGCAGTTGCATTA
CCTGTCTACTTCCTATTTCTATTGTAATTGGTTACAGTAACCTGCTATGTACTCTAATTT
GGAGTTAATATGATGAATACTTCTCCATTCAACTCCATTCATACAGTCACAGATAACTAT
GCTAAAAATAAACAGTGCAAGAAATACCAAGAGAGGCCGTCCCAGCATTAAGATATATTC
CTATTGGTGAAGTAAACGAAATGTTCTTTCTTGGAGCCAAAGAACTTTACACCAAAAACT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LFLSSQFGFILYLVWAFVPESWLNSLGLTYWPQKYWAVALPVYLLITI----VIGYILLFGINMMSTSPLDSIHTITDNYAKNQQQKKYQE-EAIPALRD
LFLSSQF.F.LYL.WA..PESWLNSLGLT.WPQKYWAVALPVY.L.......V..Y.L.FG.NMM.TSP..SIHT.TDNYAKN.Q.KKYQE.EA.PALR.
Retrocopy
LFLSSQFDFTLYLRWASIPESWLNSLGLTFWPQKYWAVALPVYFLFLL*LVTVTCYVL*FGVNMMNTSPFNSIHTVTDNYAKNKQCKKYQE/EAVPALRY


Parental protein
IPISEVNRMFFLAAKEL-TPKT
IPI.EVN.MFFL.AKEL.TPKT
Retrocopy
IPIGEVNEMFFLGAKEL\TPKT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide