RetrogeneDB ID:
retro_ecab_349
Organism:
Horse ( Equus_caballus )
Location:
15:40070246-40070629 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.69 %
Coverage:
55.6 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
KIAA0947
Parental gene aliases:
No gene alias available
Parental gene description:
KIAA0947 [Source:HGNC Symbol;Acc:29154]

Genomic region (view in browser)





>retro_ecab_349
CAAGGATGTCCAGAAACAGAATTTCACACCAGTGAAAAACTTGGTGATCTAAGTGATAAC
ACTTGGGAACACATAATTGCCATCTGTCTTCTCTGCTGCCATGAGCAATAGATTTGCACA
CATGATAAGATCATAAGTAAAGAGCTGTGGCTTGTAATGGATAAGTGGATAAAATGCAGA
AAAGGACTTGTGAGCATTGCATATACTCCTGATATTATTATGGCATCAATACTGAGGCTG
ATGGTCATTTAGGCCCATTGGATTTGAAGAAATGGTTTCCATCTCATGTCAAAAATATCA
GTTTGGTTATGGATATGTTTATACAGCATGTTCAAGATGAAGATATACCATGGGGTACAC
AGTTAGCAGCTGTGTGTACACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QLCPNTEFQSSERFGEDLSENTWEYVLAIDLLCCHQKWVWTHDHIISKELWPVMDKWIKYRKGHANIAHTPDVIIASVLRLI-GRLGQLGLKEGFPSAVK
Q.CP.TEF..SE..G.DLS.NTWE...AI.LLCCH.....THD.IISKELW.VMDKWIK.RKG...IA.TPD.I.AS.LRL..G.LG.L.LK..FPS.VK
Retrocopy
QGCPETEFHTSEKLG-DLSDNTWEHIIAICLLCCHEQ*ICTHDKIISKELWLVMDKWIKCRKGLVSIAYTPDIIMASILRLM/GHLGPLDLKKWFPSHVK


Parental protein
NISSVIGMFIQHAQDEDIPWGIQLAAVYAL
NIS.V..MFIQH.QDEDIPWG.QLAAV..L
Retrocopy
NISLVMDMFIQHVQDEDIPWGTQLAAVCTL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide