RetrogeneDB ID:
retro_ecab_350
Organism:
Horse ( Equus_caballus )
Location:
15:66575435-66575803 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.0 %
Coverage:
76.58 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
UBE2I
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-conjugating enzyme E2I [Source:HGNC Symbol;Acc:12485]

Genomic region (view in browser)





>retro_ecab_350
TTTGGTTTTGTGGCAGCGTCTACAGAAATTCTAGATGGCAGGATCAGTCTCATGAACTGG
AAGAGTACCATTCCAGGAAAGAGAGAAAAGAAAGAAACCCCATTGAAAAGAGACTTGTTT
CAACTATGATTGTTTTTCAAGGAAGATTTTCCATTCTCACCACCATAATGAAAATTTAAA
CCACCATTACTTCACACAATGACTATCCTTCAAGAATAATGTGTCTGCCCATCTTAGAGG
AAGATAAGGATTAAAGTCCAGCAATTACAATTAAACATACCTTATTAGAAATACAGAAAT
TCCTAAATGAACCAAATATTCAAAATCAACATTGCACAGGTTTGAGAATTTACTGCCAAA
ACAATATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FGFVAVPTKNPDGTMNLMNWECAIPG---KKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHP-NVYPSGTVCLSILEEDKDWRPAITIKQILLGIQ
FGFVA..T...DG...LMNW...IPG...KK.TP....LF.L...FK.D.P.SPP..KF.PPL.H..N.YPS...CL.ILEEDKD..PAITIK..LL.IQ
Retrocopy
FGFVAASTEILDGRISLMNWKSTIPGKREKKETPLKRDLFQL*LFFKEDFPFSPP**KFKPPLLHT/NDYPSRIMCLPILEEDKD*SPAITIKHTLLEIQ


Parental protein
ELLNEPNIQDPAQAEAYTIYCQNRV
..LNEPNIQ.........IYCQN..
Retrocopy
KFLNEPNIQN-QHCTGLRIYCQNNI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide