RetrogeneDB ID:
retro_ecab_351
Organism:
Horse ( Equus_caballus )
Location:
15:71132625-71133210 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
99.49 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_351
AGTATGCTCAGGCTTCAGAAGAGACTTGCCTCCAGTGTCCTCCGCTGTGGCAAAAAGAAG
GTCTGGCTGGACCCCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATC
CGGAAGCTGATCAAAGATGGCCTGATCATCCGGAAGCCTGTGACTGTCCATTCCCGGGCT
CGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCATATGGGCATCGGTAAGCGA
AAGGGTACTGCCAATGCTCGAATGCCAGAGAAGGTAACCTGGATGAGGAGGATGAGAATC
CTGCGCCGGCTGCTTAGAAGATACCGTGAATCTAAGAAGATTGACCGCCACATGTATCAC
AGCCTGTACCTGAAAGTGAAGGGTAATGTGTTCAAAAACAAGTGGATTCTCATGGAACAC
ATCCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTTCTGGCGGACCAGGCTGAGGCC
CGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGCGAAGAGCGGCTCCAGGCCAAGAAA
GAGGAAATCATCAAGACTCTCTCCAAGGAGGAAGAGACCAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.19
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRI
SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRI
Retrocopy
SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRI


Parental protein
LRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK
LRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNK.ILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK
Retrocopy
LRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKWILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide