RetrogeneDB ID:
retro_ecab_352
Organism:
Horse ( Equus_caballus )
Location:
15:71374704-71375186 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.61 %
Coverage:
86.7 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
FKBP3
Parental gene aliases:
No gene alias available
Parental gene description:
FK506 binding protein 3, 25kDa [Source:HGNC Symbol;Acc:3719]

Genomic region (view in browser)





>retro_ecab_352
GCCTCTAACCATTTCTTTGCAAATAAGCACTTCACAGGTACAGGAAGTAAAGTATAAGGT
GTCAGATCAGGTGGAAAACAAGAAGCTTGGTGTCAAAGAAATCAAGTCATAAGAGATTCT
GGGTGGGGGTTCATCAAAGCATACAAACATCTGTTCTTAAAAATAGAGATAAAGCCAACT
TTCCCCCGAAGGAAGTTGTTCATTGCTGTTACACGGGATACTCACTACAGGATGAGAACA
TTTTTGATACTAATATTAAAACCACCTCACAGAAGATGACAAATGCTGGAAATTCAAGTT
TTACGGTTAGAATAAGTGAAGGTAGCAGAGAGTGGGACAAAGCACCCTTGACAATAAATA
AACAGGGAAAAGCTCTGTTGGAGAGCCAGCCAGAATAGTCTCGTGGAAAGAAAGGACAAT
GGAATGCCAAAATTCTACCAAACACAAAATTCTTTTTCGAAATGGAATTACTGCATCATG
AT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AYNHLFESKRFKGT-ESVSKVSEQVKNVKLNEDKPKETKSEETLDEGPPKYTK-SVLKKGDKTNFPKKGDVVHCWYTG-TLQDGTVFDTNIQTSSKKKKN
A.NH.F..K.F.GT.E...KVS.QV.N.KL.....KE.KS.E.L..G..K.T..SVLK..DK.NFP.K..VVHC.YTG..LQD...FDTNI.T.S.K..N
Retrocopy
ASNHFFANKHFTGT\EVKYKVSDQVENKKLGV---KEIKS*EILGGGSSKHTN\SVLKNRDKANFPPK-EVVHCCYTGYSLQDENIFDTNIKTTSQKMTN


Parental protein
AKPLSFKVGIGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLIFEVELVDID
A...SF.V.I....R.WD.A.LT..K..KA.LE..PE...GKKGQ..AKI.PN.K..FE.EL...D
Retrocopy
AGNSSFTVRISEGSREWDKAPLTINKQGKALLESQPE*SRGKKGQWNAKILPNTKFFFEMELLHHD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide