RetrogeneDB ID:
retro_ecab_353
Organism:
Horse ( Equus_caballus )
Location:
15:80421086-80421323 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.45 %
Coverage:
94.12 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
UFM1
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-fold modifier 1 [Source:HGNC Symbol;Acc:20597]

Genomic region (view in browser)





>retro_ecab_353
TTTAAGATCACACTGATGATGGACCATGGCTGCTTTACAAGGAACTCAGTTTTCCTGAAA
GTACACCTTTCACAGCAGTCTTAAAGTTTGCAGCAGCAGAATTTGAAGTTCCTCCAGCAA
CAACTGCAGTGATTACTAATAATGGAATAGAAATAAATCCTGAACAGACTACCAGAGACA
TTTTTTTAAAGTATGTTTCAGTGTGCAAATTGTTCCTAAAATAATACTGGAAGTTGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FKITLTSD-PRLPYKVLSVPEGTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGS-ELRIIPR-DRVGSC
FKITL..D.P.L.YK.LS.PE.TPFTAVLKFAA.EF.VP.AT.A.ITN.GI.INP.QT....FLK..S....I.P.....GSC
Retrocopy
FKITLMMD/PWLLYKELSFPESTPFTAVLKFAAAEFEVPPATTAVITNNGIEINPEQTTRDIFLKYVS/SVQIVPK/NNTGSC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide