RetrogeneDB ID:
retro_ecab_354
Organism:
Horse ( Equus_caballus )
Location:
16:1289157-1289429 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.57 %
Coverage:
87.5 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL37
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L37 [Source:HGNC Symbol;Acc:10347]

Genomic region (view in browser)





>retro_ecab_354
ATCGTTGGAAAGCGTCACGGTGACAAGCACGTGTTGTGCCGCTGCTGTGGCCCTAGGCCT
GTCACCTTCAGAAGTCCACCTGTGGCAAAGATGGCTACCCTGCCAAGAGGAACAGAAAGT
GTAACGGGAGTGCCGTGGCCAAAAGACGAAATACCACCAGGACCAGTCAAATGAGGCACC
TAAAAATTGTATACTGTAGATTCAGGCATGGGTTCTGTGAAAGAACACCACCTAAACCCA
AAAGGACAGCTGTTGCTGCCTCCAGTTCATCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VIVRKANKTHTLCRRCGSK-AYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPKRAAVAASSSS
.........H.LCR.CG...A.HLQKSTCGK.GYPAKR.RK.N.SA.AKRRNTT.T..MRHLKIVY.RFRHGF.E.T.PKPKR.AVAASSSS
Retrocopy
IVGKRHGDKHVLCRCCGPR/ACHLQKSTCGKDGYPAKRNRKCNGSAVAKRRNTTRTSQMRHLKIVYCRFRHGFCERTPPKPKRTAVAASSSS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide