RetrogeneDB ID:
retro_ecab_356
Organism:
Horse ( Equus_caballus )
Location:
16:12288741-12289088 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.1 %
Coverage:
93.55 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
HINT1
Parental gene aliases:
No gene alias available
Parental gene description:
histidine triad nucleotide binding protein 1 [Source:HGNC Symbol;Acc:4912]

Genomic region (view in browser)





>retro_ecab_356
AGGCTCAGGCCACCCAACCAGATAACAACACGATCTTCAGGAAGAATACCTGCAAGGAAA
TCTCGGCCAAAAGTCATTTTTGAGGATGACTGACATCTTGCTTTCCATGATATTTTCCTT
CAAGCACCAACACATTTTGTGGTGACATCTAAGAAACAGGTTTCTCGGATTTCTGTAGCA
GAGGTGATGATAAAAGTCTTCTTGGACATTTAATGATTGTTGGTAGGAAATGTGCTGCTG
CTCTGGGCCTGAAGAAGGGTTGTGGAATGGCGGTGAAGGAAGGTTCCAGTAAGGGACAGG
CTGGCTGTCACTTTCATCCCCGTGTTCCTAGAAGTCAGCAGATGAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RLRPLGLVGTRSSGRSFAKESQPKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISVAE-DDDESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGG
RLRP.....TRSSGR..A..S.PK.IFEDD..LAFHDI..QAPTHF.V..KK..S.ISVAE..DD.SLLGHLMIVG.KCAA.LGLKKG..M.V.EGS..G
Retrocopy
RLRPPNQITTRSSGRIPARKSRPKVIFEDD*HLAFHDIFLQAPTHFVVTSKKQVSRISVAE/GDDKSLLGHLMIVGRKCAAALGLKKGCGMAVKEGSSKG


Parental protein
QSVYHVHLHVLGGRQMN
Q...H.H..V....QMN
Retrocopy
QAGCHFHPRVPRSQQMN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide