RetrogeneDB ID:
retro_ecab_357
Organism:
Horse ( Equus_caballus )
Location:
16:30880855-30881790 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.68 %
Coverage:
66.6 %
Frameshifts:
3
Stop codons:
8


Parental gene:
Parental gene symbol:
NONO
Parental gene aliases:
No gene alias available
Parental gene description:
non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871]

Genomic region (view in browser)





>retro_ecab_357
ACTATGCCCCAATATAACCATCTCTTTATGGGGAATCTTCTTCCTGACATTGCTGAGGAG
GAAATGAGGAAACTGTTTGAGAAATATGGGAAGGCAGGCAAAGGCTTCATTCATAAGGAC
AAGGGCTTCATCCTTATTTGTTTGGAAACATAAAGCCTAGCAGAGATTGCCAGAGTGGAG
TTGGACAACATGCTACTCCATGGAAAGCAGCTAAATGTATGCTTGGCTGGCCATAGTACA
TCCCTTATGTTCTGAAACCTTCCTCAGTATGTGTCCAACAACTGCTGAAGGAAGCCTTTT
CTGTATTGGGCAGGTGGAGAGGGCTATAATCATAATGCATGATTGAGGAAGGTCCTCAGG
AAAAGGCAAGGTTGAGTTCTCAGGGAAGCCATCTGCTGGCAAAACTCTGGACAGATGCAG
TGAAGGCTCCTGACTGCTAACCACATTTCCTCAGCCTGTGACTATGGAGCCCATGGACCA
GTTAGATGATGAAGAGGGATTTCCAGAGAAGCTGGTTATAAAGAACTAGCAATTTCACAA
GGAGTGAGAACGGCCACCCAGATTTGCACAGCCTGGCTCTTTTGAGTATGAGTATGCCAA
TGTGATGGAAGGCATTCAATGAGATAGAGAAGCAGCAGCAGGAGCAAGTGGACCTCAACA
TCAAGAAAGCTCATGGCAAACTGGAGATGGAGATGGAGGCTGCCCACTACAAGCACCAGG
TCATGCTAATGAGGCAGGATTTGATGAGGCTTCAAGAACTTCAGAGGATGAATGAGCTGC
ACAACCAAGACGTGCAAAAACAAAAGCAGTTGGAGCTCAGGCAGGAGGAGGAGTACAGGT
GTCATGAGGAAGAGCTGCAGCGGCAACAGGAAAAAATGATGCAATGACAGGAGGAGGGAT
TCAACGGGACCTTCCGTGATGCTAGAGATATGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSN-ELLEEA
T..Q...LF.GNL.PDI.EEEMRKLFEKYGKAG..FIHKDKGF..I.LET..LAEIA.VELDNM.L.GKQL.V..A.HS.SL...NLPQYVSN..LL.EA
Retrocopy
TMPQYNHLFMGNLLPDIAEEEMRKLFEKYGKAGKGFIHKDKGFILICLET*SLAEIARVELDNMLLHGKQLNVCLAGHSTSLMF*NLPQYVSN/QLLKEA


Parental protein
FSVFG-QVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQFHKEREQPPRFAQPGSFEYE
FSV.G.QVERA..I..D.GR.SGKG.VEFSGKP.A.K.LDRCSEGS.LLTTFP.PVT.EPMDQLDDEEG.PEKLVIKN.QFHKE.E.PPRFAQPGSFEYE
Retrocopy
FSVLG/QVERAIIIMHD*GRSSGKGKVEFSGKPSAGKTLDRCSEGS*LLTTFPQPVTMEPMDQLDDEEGFPEKLVIKN*QFHKE*ERPPRFAQPGSFEYE


Parental protein
YA-MRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQEEMMRR
YA.M.WKA..E.EKQQQ.QVD.NIK.A..KLEMEMEAA...HQVMLMRQDLMR.Q.EL.RM.ELHNQ.VQK.KQLELRQEEE.R..EEE..RQQE.MM..
Retrocopy
YA\M*WKAFNEIEKQQQEQVDLNIKKAHGKLEMEMEAAHYKHQVMLMRQDLMRLQ-ELQRMNELHNQDVQKQKQLELRQEEEYRCHEEELQRQQEKMMQ*


Parental protein
QQEGFKGTFPDAREQE
Q.EGF.GTF.DAR..E
Retrocopy
QEEGFNGTFRDARDME


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide