RetrogeneDB ID:
retro_ecab_358
Organism:
Horse ( Equus_caballus )
Location:
16:36595639-36596175 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.0 %
Coverage:
70.2 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SET
Parental gene aliases:
No gene alias available
Parental gene description:
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]

Genomic region (view in browser)





>retro_ecab_358
AGACTTAATGAACAAGCTAGCGAGGAGATTTTGAAAGGAGAACAAAAATATAACAAACTC
CGCCACCATTTTTTCAGAAGAGGGCAGAATTTATCACCAAAATCCCAAATCTGGGGGTAA
CAACATTTGTCAACCATCCACAAGTGTCTGCATAGCTTGGAGAGGAGGATGAAGAGGGAC
TGCATTATTTGAAAAGAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGCTACAGAA
TAGATTTTTCTTTTGATGAAAACCCTTACTTTGAACATAAAGCTCTCTCCAAAGAATTTC
ATCTGAATGAGACTGGTGATCCATCTTCAAAATCCACTGAAATAAAATGGGAATCTGGAA
AGGACTGGAGGAAACATTCAAGTCAAATGAAGAATATAGCCAGCAGGAAGAGACAGCATG
AGGAACCAGAGAGCTGCTTTACCTGGTTTACCAACCATTCCAATGCAGGTGCAGATGAGT
TAGGAGAGGTCACCAAAGATGCTATTTGGCCAAATCCATTACAGTACTATTTGGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RLNEQASEEILKVEQKYNKLRQ-PFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKILSKE
RLNEQASEEILK.EQKYNKLR..PFFQKR.E.I.KIPN..VTTFVNHPQVSA.LGEEDEE.LHYL.RVEVTEFEDIKSGYRIDF.FDENPYFE.K.LSKE
Retrocopy
RLNEQASEEILKGEQKYNKLRH/PFFQKRAEFITKIPNLGVTTFVNHPQVSA*LGEEDEEGLHYLKRVEVTEFEDIKSGYRIDFSFDENPYFEHKALSKE


Parental protein
FHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLV
FHLNE.GDPSSKSTEIKW.SGKD..K.SSQ..N.ASRKRQHEEPES.FTWFT.HS.AGADELGEV.KD.IWPNPLQYYLV
Retrocopy
FHLNETGDPSSKSTEIKWESGKDWRKHSSQMKNIASRKRQHEEPESCFTWFTNHSNAGADELGEVTKDAIWPNPLQYYLV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide