RetrogeneDB ID:
retro_ecab_361
Organism:
Horse ( Equus_caballus )
Location:
16:45791698-45792853 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
94.85 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1
Parental gene:
Parental gene symbol:
RAD23B
Parental gene aliases:
No gene alias available
Parental gene description:
RAD23 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:9813]
Genomic region (view in browser)
>retro_ecab_361
GTGAAAGCACTGGAGGAGAAGATCGAGTCTGAAAAGGGGAAAGATGCCTTTCCTGTAGCA
GGTCAAAAATTAATTTATGCAGGCAAAATCCTCAATGATGATACTGCTCTAAAGGAATAT
AAAATTGATGAGAAAAACTTTGTGGTGGTTATGGTGACAAAACCCAAAGCAGTGACAACA
CCAGCACCAGCTACAACACAGCAATCAAATTCTGCCACCACTACCACATAGTTCCTCCAC
AGCACCAGCTGTGGCTCAGGCTCCAACCCCCGCCCCTGCCTTGGCTCCCACTCCCACCCC
TGCATCCATCACTCCAGCATCAGCAACAGCATCTTCTGAACCTGCACCTGCTAGTGCAAC
GAAACAAGAGAAACCTGCAGAAAAGCCAGCAGAAACACCAGTGGCTACTAGCCCAACATC
AACTGACTGTACATCAGGAGATTCTTCTCGGTCAAACCTTTTTGAAGATGCAACAAGTGC
GCTTGTGACAGGTCAGTCTTATGAGAATATGGTAGCAGAGATCATGTCAATGGGCTGTGA
ACGAGAGCAAGTAATTGCGGCCCTGAGAGCCAGTTTCAACAACCCTGACAGAGCAGTGGA
GTATCTTTTCATGGGAATCCCTGGAGACAGAGAGAGTCAGGCTGTGGTTGACCCCCCTCC
AGCAGCTAGTACTGGGGCTCCTCAGTCTTCAGTGGCTGCAGCTGCAGCAACCACGACAGC
GACGACTACAACAACAAGTTCTGGAGGACATCCCCTTGAATTTTTACGGAATCAGCCTCA
ATTTCAACAGATGAGAAAATTATTCAACAGAATCCTTCCCTGCTTCCAGCATTGCTACAA
CGGATAGGTCGGGAAGATCCTCAGTTACTTCAGCAAATTAGCCAACACCAGGAGCATTTT
ATACAGATGTTAAATGAACTGGTTCAAGAAGCTGGTGGTCAAGGAGGAGGGGGTGGAGGG
GGCAGTTGAGGAATTGCAGAAGCTGGAAGTGGTCATATGAACTACATTCAAGTAACGCCT
CAGGAAAAAGAAGCTATAGAAAGGCTAAAGGCTTTGGGATTTCCTGAAGGACTTGTGATA
CAAGCATATTTTGCCTGTGAGAAGAACGAGAACTTGGCTGCCAAGTTTCTTCTACAGCAA
AACTTTCATGAAGAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.93 |
| SRP021940_cerebellum | 1.74 |
| SRP021940_embryo | 3.93 |
| SRP021940_placental_villous | 3.17 |
| SRP021940_synovial_membrane | 1.22 |
| SRP021940_testis | 0.83 |
Parental protein coverage
Changes in the retrocopy sequence
