RetrogeneDB ID:
retro_ecab_363
Organism:
Horse ( Equus_caballus )
Location:
16:45992158-45992627 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.46 %
Coverage:
60.31 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
CENPP
Parental gene aliases:
No gene alias available
Parental gene description:
centromere protein P [Source:HGNC Symbol;Acc:32933]

Genomic region (view in browser)





>retro_ecab_363
CAAAAATCATTTCAAGAAATATATCAATCAGATTCTGAAGGATGGGAGTCTTCAAAAGAT
CTGAGAGGTCAGCTTGGACATTTAGAATCAGAACTTTCATTTCTAAATACACTTACTGGC
ATCAACGTAAGAAATTACTCCAAGAGGACAGAGGTTTTAGCAAGCACTGAGATGACGGAG
AAAAGTACAATGAAAGTTCTACAAAGACAGATTATCAGGAAATTGCCACATGGCTACATT
TCAACTGGGATTTCAGATTCTGGGAATCCAGAATGAGGAGAGTTCGTCTTTCATTACTAG
TGACCTCAATATGATAATGGAGCTCACAGAATACTCAGAATTAAGTAAATACGTTTTGTG
TCTAAAGCAGAAGAAAGAAGCTATTTTTTCATGGTTTTCAGAAGCTTACACTTTTTTGAG
GAGTGGTGTGAATAAATGTAAGCACATACTTAAACATTTAGAGGTAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKSFQEIYQSDSEGWESSKDLRSHLGHLESEILFLSTLTGIKIRNYSKKTKDLTSTEMTEKSIKKVLQRHRLSGNCH-MITFQLEFQ-ILEIQNKKSLSS
.KSFQEIYQSDSEGWESSKDLR..LGHLESE..FL.TLTGI..RNYSK.T..L.STEMTEKS..KVLQR.......H....F...F..IL.IQN..S.S.
Retrocopy
QKSFQEIYQSDSEGWESSKDLRGQLGHLESELSFLNTLTGINVRNYSKRTEVLASTEMTEKSTMKVLQRQIIRKLPH/WLHFNWDFR/ILGIQNEESSSF


Parental protein
VITDLNIIMEPTEYSELSEFVSRAEERRDLFM--FFRSLRFFVEWCEYRKRTFKHFKEK
...DLN.IME.TEYSELS..V.............F.....F........K...KH...K
Retrocopy
ITSDLNMIMELTEYSELSKYVLCLKQKKEAIFSWFSEAYTFLRSGVNKCKHILKHLEVK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide