RetrogeneDB ID:
retro_ecab_364
Organism:
Horse ( Equus_caballus )
Location:
16:55197629-55198028 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
59.56 %
Coverage:
83.75 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
FAM96A
Parental gene aliases:
No gene alias available
Parental gene description:
MIP18 family protein FAM96A [Source:RefSeq peptide;Acc:NP_001092912]

Genomic region (view in browser)





>retro_ecab_364
GCTGCCTGGAAGCCCCGGATCATGGAGGAGGAGGGCTAGGGGATTACAAATTGAGTCAGA
CTCTGGAACCCAAAGAAGCCTAAAACTTTGGAAGAATTGGAAGTGATAATGGAAAGTAAA
GTAGAAGTTCAGGAACTAAATGAAGAAGACTGTCTGGTTATTATCAGGTTCACAGCACAA
TATTTTATTGCTATTTGGCGACTCTTATTGGGCTGTGCTTAAGAGTAAAACTTAAGTGGA
GTTTATCTTTGAAACCTACAATGGAAATCTACATTTCGGAAGGAGCCCACTCAAAATAAG
AAGACGTCAATAGGCAGATAAATGACAAAGTGAGTGGCAGGTGTGCAATGGAGACCCCCA
ACTTACTGGAAATGTGGGAACAAGTGGGTCCTTCAACCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.18

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AARQPRTMEEKALEVYDLIRTIRDPEKPNTLEELGVVTESCVEVQEINEEDYLVIIRFTP-TVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHS
AA..PR.MEE.........R....P.KP.TLEEL.V..ES.VEVQE.NEED.LVIIRFT..T...C.LATLIGLCLRVKL...L..K...EIYISEG.HS
Retrocopy
AAWKPRIMEEEG*GITN*VR-LWNPKKPKTLEELEVIMESKVEVQELNEEDCLVIIRFTA/TIFYCYLATLIGLCLRVKLKWSLSLKPTMEIYISEGAHS


Parental protein
TEEDINKQINDKERVAAAMENPNLREIVEQC-VLEP
..ED.N.QINDK.....AME.PNL.E..EQ..VL.P
Retrocopy
K*EDVNRQINDKVSGRCAMETPNLLEMWEQV\VLQP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide