RetrogeneDB ID:
retro_ecab_365
Organism:
Horse ( Equus_caballus )
Location:
16:63795273-63795567 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.37 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
SUMO1
Parental gene aliases:
No gene alias available
Parental gene description:
small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]

Genomic region (view in browser)





>retro_ecab_365
ATGTCTGACCGGGAGGCGACCCCTTGACTAAGGAATTGGTGGATAAGGAGGGAAAATACC
TTAAAATCAAAGTTGTTGCACAGGACAGCAGTAAGAGTCACTTCAAGGTAAAGATGGCAA
ACACATCAAGAGGCTCAATCATACCATCAACATCAGGGAGTTCCCAGGAAGTTACTTGGG
TTTCTCCTTGAAGGTCAGTGGATTTCTAACAAACCTGCTCTGAAAGAACTGGAAATGGAG
GAAGGAGGTGCGATGGATGTTTATCAAGAACAAACAGCAAGCCTTTCAACAGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSDQEAKP-STEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMT-THLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGH
MSD.EA.P..T..L.DK.EG.Y.K.KV..QDSS..HFKVKM..TH......SY.Q.QGVP...L.FL.EGQ.I......KEL.MEE.....VYQEQT...
Retrocopy
MSDREATP/LTKELVDK-EGKYLKIKVVAQDSSKSHFKVKMA\THQEA--QSYHQHQGVPRKLLGFLLEGQWISNKPALKELEMEEGGAMDVYQEQTASL


Parental protein
STI
ST.
Retrocopy
STV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide