RetrogeneDB ID:
retro_ecab_366
Organism:
Horse ( Equus_caballus )
Location:
16:72779013-72779253 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.25 %
Coverage:
79.21 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CRIPT
Parental gene aliases:
No gene alias available
Parental gene description:
cysteine-rich PDZ-binding protein [Source:HGNC Symbol;Acc:14312]

Genomic region (view in browser)





>retro_ecab_366
GTGTGCAGAAAATGTGCAAAGAAACTTGGCACCATTATACTCCAGATACACATCTTTCCA
TGTGCAAGGAATACCACAGAAATTGGTGGAAGGAAGCTGAACAAAAATAAAGCTTTGACT
TCCAAAGAAGCAAAAGTCAATCCATATGGAAAGAAAAAGCCCTCCACTTGCAGAATTTGT
GAAAGTTCTTTGCACCAGCTGGGTTCTCATTACTGCCAGGGCTGTGCCCACAAAAAGGGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKG
VC.KC.KKLGT.I........ARNTTE.GGRKLN.NKALTSK.A...PYGK.K.STCRIC.SS.HQ.GSHYCQGCA.KKG
Retrocopy
VCRKCAKKLGTIILQIHIFPCARNTTEIGGRKLNKNKALTSKEAKVNPYGKKKPSTCRICESSLHQLGSHYCQGCAHKKG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide