RetrogeneDB ID:
retro_ecab_367
Organism:
Horse ( Equus_caballus )
Location:
16:73233929-73235092 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
91.26 %
Coverage:
61.98 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
DLGAP5
Parental gene aliases:
No gene alias available
Parental gene description:
discs, large (Drosophila) homolog-associated protein 5 [Source:HGNC Symbol;Acc:16864]
Genomic region (view in browser)
>retro_ecab_367
CCGGCCACAGGAGCGACGCGTGATAAAGAAACAGAAAGAAAAGTACCCAATCAAGGAAGG
CCTGCCAAAAAGATAGAAAGAAAACCTGGCAAGGTCGTTTCCTTTAAAGTTGATAGTGAA
GAAAATACTTTGGAGTCACAAACCAATGTGACAAACGGAACGGATCCAGATGGAGTCTTA
TCAAAAATGGAAAAGTTACCTAAGTCAAATCCTGCAGCAGTGAAAGGGAGGCCATCCTTC
GCACCAGTAGATTTCGTATTTCGGCCTCCAGATGGTCTGAAGAGCTATGAGATAACACCT
AGGAAGCCCACAAAAACCACTGCGTGGACGCCCGCTTACAGCTGCAGCTCTTTAAACACG
GAAGTTGATAAGGCTCTAGAAGCAACAAAAGAAATTTTGGCACAGAAATGTAAACCTTCA
GCACATCAAGATTACGATGAATTTCGCCGTCCTTTGCGCTCCCTAGCAGTCGGGAGCACA
GATCGTGTCTTAAAGAAAAATGAAACTACTACTGAAAATCTACATGGCCTTCCAATAAAA
GAAGTCCCATCACTTGAAATAAATGAGGATCAGACATCTCAGCAACCACACGTGCTGTAT
TTCAGAAATATTCTCCAGTCAGAAACTGAAAAACTAACTTCACACTGCCTTGAGTGGGAA
AGGAAGCTTGAATTGGACATTCCAGATGAAGCCAAAGACCTTATTCGCCTGGCAGTTGGT
CAAACAAGACTCCTTATGAAAGAAAGGTTCAAACAGTTTGAAGAACTGGTGGACAATTGT
GACTATAAACGAGGAGAAAAGGATACCACCTGTACAGACCTGGATGGCTTTTGGGATATG
GCTAGCCTTCAGATATGGGATGTAAACCAAAAATTCAACAATCTGACCAAACTGGAGGAG
TGTGAATGGCAAAACAATAATAATACAAGCAAAAAAGTCTTTCAGAAAAAAGTTGTTTCG
GGTATAGCAAGTAAACCAAAACAGGACGATGCTGGGAGAATTGCAGCCAGAAGTCGCCTC
GCTGCTGTGAAGAAGGCAGTGAGAGAGAGGATGCACGGGGAGAGCAGGCCGAGGCCGAGG
GCTCTGCAGCGCCGAAGGAAGTTGATCAAATAGTGTTTGACGCTGGATTTTTTAGAATTG
AAAGTCCCGTTAAATCGTTCTCA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 1.92 |
| SRP021940_cerebellum | 7.67 |
| SRP021940_embryo | 2.35 |
| SRP021940_placental_villous | 0.76 |
| SRP021940_synovial_membrane | 1.77 |
| SRP021940_testis | 1.54 |
Parental protein coverage
Changes in the retrocopy sequence
