RetrogeneDB ID:
retro_ecab_369
Organism:
Horse ( Equus_caballus )
Location:
16:82791202-82791513 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.75 %
Coverage:
77.04 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_369
GCCCTCAGAACTCTCGTGAAGCCCACGATCATCAACAAGGGACCAAGAAGTTCATCCAGC
ACCAGGCAGACCGATACGTCAACATTAAGTGTAACTGGCGGGGACCTGGAGGCTTGACCA
CAAGGTCCAGAGCAGATTCAAGGCTCGGATTGTGATGCCCAACGCTGGTCACCAGAACAA
TAAGAAAACAAAGGACAGGCTGCCCAGCGTTTTCCAGAAGTTCCTGATCCACAAAATCAT
GGAGCTGGAGATGCTGCCGACGTGCAACAGACCTTATTGTACTGAGATTACCCAAAAATG
TTTCCTCCAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALRPLVKPKIVKKR-TKKFIRHQSDRYVKIKRNWRKPRG-IDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIA
ALR.LVKP.I..K..TKKFI.HQ.DRYV.IK.NWR.P.G..D..V..RFK..I.MPN.G...NKKTK..LPS.F.KFL.H...ELE.L..CN..YC.EI.
Retrocopy
ALRTLVKPTIINKG/TKKFIQHQADRYVNIKCNWRGPGG/LDHKVQSRFKARIVMPNAGHQNNKKTKDRLPSVFQKFLIHKIMELEMLPTCNRPYCTEIT


Parental protein
H-NVSSK
..NVSSK
Retrocopy
Q\NVSSK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide