RetrogeneDB ID:
retro_ecab_370
Organism:
Horse ( Equus_caballus )
Location:
16:4770383-4770614 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.82 %
Coverage:
96.25 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NDUFA4
Parental gene aliases:
No gene alias available
Parental gene description:
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa [Source:HGNC Symbol;Acc:7687]

Genomic region (view in browser)





>retro_ecab_370
CGCCCGATCCTCACTCCGGCCAAGAAACATCCGAGCTTGATCCCCCTCTTTATCTTTCTT
GGAGCCAGAGGTGCTGGAGCACCACTCTGTGTCTTGTGCCCGGCAGTGTTCAATCCAGAT
GTCAGTTGGGACAGAAAGAATAACCCAGAACCCTGGAACAAACCGGGTCCCAGTGATCAA
TACAAGCTCTTCTCAGTGAATGTAGATTACAGCAAACTGAAGAAAGAAGGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.65
SRP021940_embryo 0.41
SRP021940_placental_villous 0.27
SRP021940_synovial_membrane 0.34
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RHILGQAKKHPSLIPLFIFIGAGGTGAALYVLRLAMFNPDVSWDRKNNPEPWNKLGPNDQYKFFSVNVDYSKLKKEG
R.IL..AKKHPSLIPLFIF.GA.G.GA.L.VL..A.FNPDVSWDRKNNPEPWNK.GP.DQYK.FSVNVDYSKLKKEG
Retrocopy
RPILTPAKKHPSLIPLFIFLGARGAGAPLCVLCPAVFNPDVSWDRKNNPEPWNKPGPSDQYKLFSVNVDYSKLKKEG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide