RetrogeneDB ID:
retro_ecab_372
Organism:
Horse ( Equus_caballus )
Location:
16:29208093-29208563 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.49 %
Coverage:
71.56 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPB2
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide B [Source:HGNC Symbol;Acc:11155]

Genomic region (view in browser)





>retro_ecab_372
ATTAAGATGAGGGAGAAGACCTCTGTTTTATTTAAAGAACTGGTCTCATTAACAAATACC
TTGAGACAGTTAAAAGCGTTTCTACCTTGTGATAAATCCATGCAAATGCAGTGTACAAAA
ACAGATTCTGATAAAATATCTAAAATGAGTAGTACGTTTGCTTGTAGGAGTACTTGTAGT
AAAAAAGAAAGAGGCCAAAACAGTGGGAAAGATTGTTGTTGCTACAAACAAAAGCCTGGT
CATGGAGCCCCAGACTCAACTAACACTCGAGGAAATTCAACACCATATCCTCGCCATTAC
CTTCCAAACTATATTTTGTTCCTCAATAACTTACCAAAGAGCCTCATGGGATGATGCTAT
CAGCTGATCGGTTCTCTAGTTTCAAGGAAATATGTTTCATACCTGGGAGACATGATATTT
CTTTTGTTCAATTTGAAAATGATGGGTTGGCTGGAGATGCCAAGTGTGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK-EKKKAKTVEQTATTANK-KPGQGTPNSVNTQGNSTPNPQ
.KMR....V.FKEL.S.TN.LRQL..F....K.M..Q..KTDSD.ISKM..TFA........KK.AKTV.......NK.KPG.G.P.S.NT.GNSTP.P.
Retrocopy
IKMREKTSVLFKELVSLTNTLRQLKAFLPCDKSMQMQCTKTDSDKISKMSSTFACRSTCS\KKKEAKTVGKIVVATNK/KPGHGAPDSTNTRGNSTPYPR


Parental protein
VPDYPPNYILFLNNLP-EETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDA
...Y.PNYILFLNNLP..E...MMLS.....F..FKE....PGRHDI.FV.FENDG.AG.A..A
Retrocopy
--HYLPNYILFLNNLP/KEPHGMMLSA--DRFSSFKEICFIPGRHDISFVQFENDGLAGDAKCA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide