RetrogeneDB ID:
retro_ecab_373
Organism:
Horse ( Equus_caballus )
Location:
16:30755426-30755755 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.83 %
Coverage:
73.2 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ATP5G2
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842]

Genomic region (view in browser)





>retro_ecab_373
AGCAGCTCTCCTGCCACAGCCCCTGACTCCCTGAAAATGTACGTCTACACCAAATTCGTC
TCCACCCATTCCCTGGTCAGGAGCACCTCTCAGCTGAGCCAACCACTGTCTGCAGCCGTA
TCGAAACGACCCAAGACACTGACAGATGACAGCCTCAAGAGCTTGGCAGCCTCACGGCCC
CGACCTCACTTATCCCTAGCCATAACTTCCAAATCAGCACCATTTCAGGAGACGTTGACA
TAGCAGCCAAGTCCACTGGGGCTGCGGCTGCCAGTTTGGGATGGCTGCCTCCAGGGCCAG
AAGTGGGAATGTTTGGAAACCTCATCATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SSSPATAPHPLKMYACAKFVSTPSMVRSTSQLLSRSLSAVVLKRPETLTDETLSSLAAPRPL-TSLIPSRGLQTSAISRDIDTAAKFIGAGAATVGVAGS
SSSPATAP..LKMY...KFVST.S.VRSTSQ.LS..LSA.V.KRP.TLTD..L.SLAA.RP..TSLIPS...Q.S.IS.D.D.AAK..GA.AA..G....
Retrocopy
SSSPATAPDSLKMYVYTKFVSTHSLVRSTSQ-LSQPLSAAVSKRPKTLTDDSLKSLAASRPR/TSLIPSHNFQISTISGDVDIAAKSTGAAAASLGWLPP


Parental protein
GAGIGTVFGSLII
G...G..FG.LII
Retrocopy
GPEVG-MFGNLII


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide