RetrogeneDB ID:
retro_ecab_374
Organism:
Horse ( Equus_caballus )
Location:
16:31521616-31521941 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.98 %
Coverage:
93.1 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_374
GGTCAAAGTCAGAGGAAGGAAGCAGAGACATCACTTCCTCCCTTAGGTCCTGTGGCAGCT
GATCCTAAAGGTTGTGTCACCATGGCCATCTGTGCCAAACCTGGTTCCAAACAAAGTGCT
GTAAGAGATCTGACAGCCAAGGCTGTTGAGTGTAGCTATTGCAGCACCCCCATGGGAAGG
AGAGGCTGACGCTGAGCTCTGTCAGTATCTTTCCAAGGTCTTAGAACTCAGGGAGAGTGA
TGTGTTTTTGGCTAAGGGTGGTAAATCTTGCGAAAAAGTGGTGAAGCTTTTGGCCTCCCC
AACTCCAGAAGACGTCTTGGAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.29
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKSESKKPETSLPPLGPVAADPKGCVTIAIHAKPGSKQNAVTDVTAEAV-SVAIAAPPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLAS
G.S..K..ETSLPPLGPVAADPKGCVT.AI.AKPGSKQ.AV.D.TA.AV.SVAIAAPP.EGEA.AELC.YLSKVL.LR.SDV.L.KGGKS.EKVVKLLAS
Retrocopy
GQSQRKEAETSLPPLGPVAADPKGCVTMAICAKPGSKQSAVRDLTAKAV\SVAIAAPPWEGEADAELCQYLSKVLELRESDVFLAKGGKSCEKVVKLLAS


Parental protein
TTPDEILEK
.TP...LEK
Retrocopy
PTPEDVLEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide