RetrogeneDB ID:
retro_ecab_376
Organism:
Horse ( Equus_caballus )
Location:
16:37322680-37322906 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
76.62 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPG
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163]

Genomic region (view in browser)





>retro_ecab_376
ATGAGCAAAGCTCACCCTCTTGAGTTAAAAAAAATTTATGAACAAGAAATTATCATTGAA
ATTAAGTGGTGGCAGACACGTCCAAGGAATATTACAGGGATTTGATATCTTTATGAATCT
TGTGATAGATGAAGGTGTGGAGAAGGCAACTAGTCGGCAACAGAACAATACTGGAATGGG
GGTATTACAAAAAAATAGTATCATGTTAGAAGCCTTGGAAAGAGTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKAHPPELKK-FMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV
MSKAHP.E....FM.KKLSLKL.GGRHVQGIL.GFD.FMNLVIDE.VE.ATS.QQNN.GM.V...NS.IMLEALERV
Retrocopy
MSKAHPLEXXX\FMNKKLSLKLSGGRHVQGILQGFDIFMNLVIDEGVEKATSRQQNNTGMGVLQKNS-IMLEALERV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide