RetrogeneDB ID:
retro_ecab_378
Organism:
Horse ( Equus_caballus )
Location:
16:38151369-38151576 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.57 %
Coverage:
57.98 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS20
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S20 [Source:HGNC Symbol;Acc:10405]

Genomic region (view in browser)





>retro_ecab_378
ATAGCTTTTAAAGATACAGGAAAATCGCCCATGGAACCAGAGGTGGCAATTCAGTAAACG
AGAATTACCCTAACCAGCTACAAGGTAAAATCACTGGAGAAGGCATATGCTGACTTGATC
AGAGTAGTAAAGGAAAAGAACCTCAAAGTGAAAGGACCAGTTCAGATCCCCACAAAGACT
AGAGAAAAACTTCTTGTGAAGGTACCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTP
.AFKDTGK.P.EPEVAI...RITLTS..VKSLEK..ADLIR..KEKNLKVKGPV..PTKT......K.P
Retrocopy
IAFKDTGKSPMEPEVAIQ*TRITLTSYKVKSLEKAYADLIRVVKEKNLKVKGPVQIPTKTREKLLVKVP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide