RetrogeneDB ID:
retro_ecab_379
Organism:
Horse ( Equus_caballus )
Location:
16:38875192-38875486 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.63 %
Coverage:
58.79 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_379
TTGTCTCCAAAAAAGTTGGGCAATCACATCACCAGGGCAACTGGTGATTGGAAGGGTCTG
AGAATCACGGTGAAACTGACTATACAGAACCAACAGGCTCAGATTGAGGTGGTACCTTCT
GCCTCTGCCCTCATCATCCAAGCCCTCAAAGAACCGCCAAGAGACAGGAAGGAGCAGAGA
AACATTAAGCACAACAGGAATATCACCTTTGACAAGATTGTCAACCTTGCCCAACAGATG
GGGTACCATCTGTCATTGGCCAGAGAACTCTCTGGAACCATTAAAGAGACCCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.53

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQM-RHRSLARELSGTIKEIL
LSPKK.G..I..ATGDWKGLRITVKLTIQN.QAQIEVVPSASALII.ALKEPPRDRK.Q.NIKH..NITFD.IVN.A.QM..H.SLARELSGTIKE.L
Retrocopy
LSPKKLGNHITRATGDWKGLRITVKLTIQNQQAQIEVVPSASALIIQALKEPPRDRKEQRNIKHNRNITFDKIVNLAQQMGYHLSLARELSGTIKETL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide