RetrogeneDB ID:
retro_ecab_38
Organism:
Horse ( Equus_caballus )
Location:
13:15630434-15631049 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.57 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_38
ATGGGCGCTTACAAGTACAACCAGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGCGA
TTTCTTCTCAGGGTGCGCTGCTGGCAGTACCGCCAGCTCTCGGCGCTGCACAGGGCGCCC
CGCCCCACCCGGCCCGATAAGGCGCGCAGACTGGGATACAAGGCCAAGCAAGGTTATGTC
ATATATCGCATTCGTGTGCGCCGTGGTGACCGCAAACGCCCCGTTCCTGAGGGCGCGACC
TACGGCAAGCCTGTGCATCATGGTGTTAACCAGCTCAAGTTTGCTCGAAGCCTTCAGTCT
GTTGCCGAGGAACGAGCTGGACGCCACTGTGGGGCTCTGAGAGTTCTGAATTCTTACTGG
GTTGGCAAAGATTCCACATACAAATTCTTTGAGGTGATCCTCATTGATCCATTCCATAAA
GCTATTAGAAGAAATCCTGATACCCAGTGGATCACCAAACCAGTCCACAAGCACAGGGAA
ATGAGAGGACTGACATCTGCAGACCGCAAGAGCCATGGCCTTGGAAAGGGCCACAAGTTC
CACCACACTATTGGTGGTTCCCGCAGTGCAGCTTGGAGAAGGCGCAATACTCTCCAGCTT
CACCGTTACCGCTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.87
SRP021940_cerebellum 0.4
SRP021940_embryo 1.41
SRP021940_placental_villous 2.95
SRP021940_synovial_membrane 3.59
SRP021940_testis 0.83

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQS
MGAYKY.QELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRG.RKRPVP.GATYGKPVHHGVNQLKFARSLQS
Retrocopy
MGAYKYNQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGDRKRPVPEGATYGKPVHHGVNQLKFARSLQS


Parental protein
VAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQL
VAEERAGRHCGALRVLNSYWVG.DSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSA.RKS.GLGKGHKFHHTIGGSR.AAWRRRNTLQL
Retrocopy
VAEERAGRHCGALRVLNSYWVGKDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSADRKSHGLGKGHKFHHTIGGSRSAAWRRRNTLQL


Parental protein
HRYR
HRYR
Retrocopy
HRYR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide