RetrogeneDB ID:
retro_ecab_380
Organism:
Horse ( Equus_caballus )
Location:
16:39647853-39648196 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.91 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_380
ATGGCCTCTGAGTTGGAGCTTGCCTGCATCTACCCGGCCCTCATCCTGCTGATGGACGAT
CAGGTGATGGTCATGGAGGATAAAATCAACGCTCTCATTAAAGCAGCTGGTGTAAATGTT
GAACCTTTCTGGCCAGGCTTGTTCGCAAAGGCCCTGGCCAATGTCACCATCAGCAGCCTC
ATATGCAGTGTAGGAGCTGGTGGACCCGCCACAGGAGCTGGTGCTGGACCAGCAGGAGGT
CCTGCCCCTCCACCACTGCTGCCCCAGCTGAGGAGAAGAAAGTGGAAGCCAAGAAAGAAG
AATTGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.2
SRP021940_embryo 0.12
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.29
SRP021940_testis 0.36

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPVSELACIYSALIL-HDDKVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVSIGSLICNVGAGGPPPPAGAAPAGGPA-PSTAAAPAEEKKVEAKK
MA...ELACIY.ALIL..DD.V.V.EDKINALIKAAGVNVEPFWPGLFAKALANV.I.SLIC.VGAGGP...AGA.PAGGPA.PST.AAPAEEKKVEAKK
Retrocopy
MASELELACIYPALILLMDDQVMVMEDKINALIKAAGVNVEPFWPGLFAKALANVTISSLICSVGAGGPATGAGAGPAGGPA/PSTTAAPAEEKKVEAKK


Parental protein
EE-SEESDDDMGFGLFD
EE..EESDDDMGFGLFD
Retrocopy
EE/IEESDDDMGFGLFD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide