RetrogeneDB ID:
retro_ecab_382
Organism:
Horse ( Equus_caballus )
Location:
16:45067065-45067437 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.77 %
Coverage:
65.46 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
TMEM134
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 134 [Source:HGNC Symbol;Acc:26142]

Genomic region (view in browser)





>retro_ecab_382
CCCCAGTTCAGCACTGATGACACTTTTGAGCTGTCCCTGGAGAATGTGGGCCCTGGGTTC
AATGGGGTTGCCCTCTTCTGGCCACTGCACTTCTAGCGCAGGCCTAATTTGAGATGGCCG
ATGAGGACAAGCAGTCCTGGCTGTGTTACGAGAACCTGGAGAATGATGAGAGTAGATCCC
AGGCCTCTCTGGAATCAGATGGGGCCGTTCAACCCAACATTCCAGCCCAACATGCATCTG
CATCTGTCAATAGTTATTTGGCACTATCAGCAAGAGTACCCAGTGCTCCTACAATGCCTG
CTGCAGCTGGATTCAACACCCTTTGATGCAGAAGAACTGCCAGTGCTGGCCTCCTTCCTG
CTCCTGCTGCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PQFSIDDAFELSLEDAGPGPESSGVTRFGPLHFERR-ARFEVAEEDKQSRLRYQNLENDEDGAQPSSEPDGGV-STRDSVQTSIGSSQWSFSTISNSTQR
PQFS.DD.FELSLE..GPG....GV..F.PLHF.RR.A.FE.A.EDKQS.L.Y.NLENDE...Q.S.E.DG.V.ST..S..T.I...Q..F.TIS.STQ.
Retrocopy
PQFSTDDTFELSLENVGPG--FNGVALFWPLHF*RR/A*FEMADEDKQSWLCYENLENDESRSQASLESDGAV/STQHSSPTCICICQ*LFGTISKSTQC


Parental protein
SYRACCSWTQHPLIQKNRR-VVLASFLLLL
SY.ACCSW.QHPL.QKN...V.....LLLL
Retrocopy
SYNACCSWIQHPLMQKNCQ/VLASFLLLLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide