RetrogeneDB ID:
retro_ecab_383
Organism:
Horse ( Equus_caballus )
Location:
16:51281085-51281958 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
86.94 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
3
Parental gene:
Parental gene symbol:
SLC25A30
Parental gene aliases:
No gene alias available
Parental gene description:
solute carrier family 25, member 30 [Source:HGNC Symbol;Acc:27371]
Genomic region (view in browser)
>retro_ecab_383
ATGGCGGCCCTCAACCGGAAGCCCTTTGTGTACGGAGGGCTGGCCTCCATCCCGGCAGAA
TGCGGTACATTCCCAATTGATTTAACCAAGATGTGGCTCCAGATTCAATGGCAGACGAAC
GACGCCAACTTGAAAGAAATCCGGTACAGAGGCGTGTTGCATGCTTTCGTGACGATAGGC
CGAGAGGAAGGGCTGAAAGCGCTGTAGGTCGGGATTGCCCCCGCGATGCTACGCCAGGCT
TCCTATGGCACCGTCAAGATAGGCACTTAGCAGAGCTTGAAGCGATTATTTGTCGAACGC
CCAGAAGGTGAGACTCTACTGATAAATGTGGTCTGTGGAATTCTCTCTGGAGTCCTATCC
TCAGCCATTGCTAATCCAACTGATGTTTTGAAAATACGGATGCAAGCACAAAGCAGCAGC
ATTCAGGGAGGAATGATAGGCAGCTTCATTAACAATTACCAGCAAGAGGGACCGAGAGGA
CTGTGGAAGGGCGTGTCCCTTACCGCTCAGAGGGCTCCTATTGTTGTTGGCTTGGAGCTG
CGGGTCTGCGACCTCGCCAAGAAGCATCTGATCCTCTGGGGCCTGATGGGAGACCCTGTG
TCTACCCACTTCCTCTCAAGCTTCACCTGAGGTCTGGCCGGGGCCCTGGCCTCAAACCCT
GTCGAAGTTGTGAGAACACCTGTGATGAATCAGAGAGTCCTTCGAGATGGCACATGCTGT
GGCTACACGGGTACCCTGGATTGCTTGTTACAGACTTGGAAGAATGAAGGGCTTTTTGCT
CTATATAAAGGGTTTTGGCCAAATTGGTTGAGACTTGGACCTTGGAACATCATTTTCTTT
GTGACATGTGAGCGGCTGAAGAAACTGGATTTG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.23 |
| SRP021940_cerebellum | 0.15 |
| SRP021940_embryo | 0.05 |
| SRP021940_placental_villous | 1.3 |
| SRP021940_synovial_membrane | 0.68 |
| SRP021940_testis | 0.12 |
Parental protein coverage
Changes in the retrocopy sequence
