RetrogeneDB ID:
retro_ecab_387
Organism:
Horse ( Equus_caballus )
Location:
16:69686796-69687506 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.39 %
Coverage:
90.15 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_387
ATTAATGAACAGAAGGAATACTTCACCAAAGAGATTGAAGCTCTAAAAAAAACCCAAACA
AATTCTGGATATGAAGAACATAATGAGATAAAAAATAATTTAGAAAGCATTAAAAATAGA
GTAGACCTTTTGGAGGAGAGAATTAGTGAGTTCAAAGATGAAAACCTAGAAATGATTCAG
GTGGAGGAGAACTAAAATTTTTAAAAATGAAGAAATTCCTGACTCAATTAGGAGAAGTAA
CATAAGGACTATAGGTATCCCAGAGGGAGAAGTGAGAGAGAAAGGAGCAGAGAGCTTATT
GAAAGAAATAATAGCTGAGAACTTCCCAAACCTGAGGATGGGACTGGACATGTAAGTACG
TGAAGCTAACATAACTCCTAATTATGTCAATGCAAAAAGACCTTCTCCAAGGCGTATAAT
ACTGTCAAAAGTCAATGACAAAGGAAAGATATGAAGGGCGGCAAGAGAGAAGAAAAACAT
ACAAAGGAACCAGCATCAGGCTTACAGCAGACTTCTCAACAGAAACCTTACAGGCTAAGA
GACAGTGGAATAATATATTCAAAATACTGAAAGACAAAAACTATCAACCAAGAATACTCT
ATCCACCAAAATTATCCTTCAGATATGACAGAGAAATAAAGGAGAAACAAAAGCTGAGGG
AGTTCATCAGCATTAGACCTGCCCTACAAGAAATGTTGAAGGGAGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDELSENFKKELE--NKKRTNQKKTTILEIKNSLEGLNGRVDDTEEWISELDERLEEITQASQIKE-TRIIKNTNMVKELWDNIKHNNIRLVGVPEGAER
..E..E.F.KE.E......TN.......EIKN.LE....RVD..EE.ISE......E.....Q..E.T.I.KN.....E..D.I...NIR..G.PEG..R
Retrocopy
INEQKEYFTKEIEAXXXXQTNSGYEEHNEIKNNLESIKNRVDLLEERISEFKD---ENLEMIQVEE\TKIFKN----EEIPDSIRRSNIRTIGIPEGEVR


Parental protein
DKGAENLFEEVIAENFPNLRKETDWKTKKANRSPNFTNVKRPTPRHIVVKLAKVND-KEKILRAARQNKITYKGTSIRLSENFSADTLQARREWNDIFRT
.KGAE.L..E.IAENFPNLR...D.....AN..PN..N.KRP.PR.I...L.KVND.KE...........TYKGTSIRL...FS..TLQA.R.WN.IF..
Retrocopy
EKGAESLLKEIIAENFPNLRMGLDM*VREANITPNYVNAKRPSPRRII--LSKVND\KERY-EGRQERRKTYKGTSIRLTADFSTETLQAKRQWNNIFKI


Parental protein
LKDKNLQPRILYAVKISFKYDGEIKTFQDKQKLREFIATRPPLQEMLRKTL
LKDKN.QPRILY..K.SF.YD.EIK....KQKLREFI..RP.LQEML...L
Retrocopy
LKDKNYQPRILYPPKLSFRYDREIK---EKQKLREFISIRPALQEMLKGAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide