RetrogeneDB ID:
retro_ecab_39
Organism:
Horse ( Equus_caballus )
Location:
X:117359842-117360325 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.5 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_ecab_39
ATGACCAACACAAAGGGAAAGAGGAGAGGCACTGGCTATATGTTCTCTAGGCCGTTTAGA
AAACATGGAGTTGTTCCTTTGGCCACATACATGCGAATCTACAAGAAAGGTGATGTTGTA
GACATCAAGGGAATGGGCACTGTTCAAAAAGGAATGCCCCACAAATGTTACCATGGCAAA
ACTGGAAGAGTCTACAATGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTA
AAGGGCAAGATTCTTGCCAAAAGAATTAATGTACGTATTGAGCATATTAAGCTCTCTAAG
AGCCGGGATAGCTTCCTGAAACGTGTGAAGGAAAGTGATCAGAAAAAGAAGGAAGCCAAA
GAGAAGGGTACTTGGGTTCAACTGAAGCGCCAGCCTGCTCCACCCAGAGAAGCACACTTT
GTGAGAACCAATGGAAAGGAGCCTGAGCTGCTGGAACCCATTCCCTATGAATTCATGGCA
TGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.25
SRP021940_embryo 0.22
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
MTNTKGKRRGT.YMFSRPFRKHGVVPLATYMRIYKKGD.VDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIK.SK
Retrocopy
MTNTKGKRRGTGYMFSRPFRKHGVVPLATYMRIYKKGDVVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKLSK


Parental protein
SRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
SRDSFLKRVKE.DQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
Retrocopy
SRDSFLKRVKESDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide