RetrogeneDB ID:
retro_ecab_390
Organism:
Horse ( Equus_caballus )
Location:
17:6692888-6693735 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
70.63 %
Coverage:
99.65 %
Frameshifts:
2
Stop codons:
3
Parental gene:
Parental gene symbol:
TPM3
Parental gene aliases:
No gene alias available
Parental gene description:
tropomyosin 3 [Source:HGNC Symbol;Acc:12012]
Genomic region (view in browser)
>retro_ecab_390
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGGAGCTCAACAAGGAGAATGCCTAGGAT
TGAGTGGAGCAGGCGGAGGCCGATAAGGCGGAGGAGGACAGGAGCAAACAGTTGGAAGAT
GAGCTAGCGTTGCTGCAAAAGAAACTCAAGACCACCAAGATGAACTTGACAAATACTCAG
AGGCTCTCAGAGATGCCCAGGAGAAGCTGGAGCCGGCAGAGCAAAAGGCCACCGACGCCG
AAGCCAATGCGGCCTCTCTGAACAGATGCATCCAACTGCTTGAGGAAGAGCTGGGTCATG
CCCAGGAGTGTCTGGCAACAGCTCTGCAGAAGCTGGAGGAGGCCAAGAAGGCAGCAGATG
AGAGGGAGAGAGGCATGAATGTCATTGAGAGCCGAACCGAAAAGGATGAAAAGAAAATGG
AAATTCAGGAGATCCAACTGTAAGAGGCTAAGCACATGGCTGAAGATGCCAACCGCAATA
TGAAGAGGTGGCCCGTAGGCTGGGCCTTATTGACAGTGACTCGGAATGTGCAGAGGAGTG
GGCTGAGCTCACAGATGGCCAAGTTCGACAGCTGGAAGAACAATTAAGAATAATGGACCA
GACCTTGAAAGTGTTAATGGTTGCAGAAGGTAAGTACTCGCAGAAGGAAGACAAATATGA
GGAAGAGATCAAAGTCCTTTCTGACAAGCTGAGGGAGGCTGAGACTCGGGCTGAATTTGC
AAAGAGGTCAGTAATTAAATTGGAGAAAAGCACTGATGACTTAGAAGAGGAGCTGAACGC
TCAGAAACTGAAGTACAAAGCCATCAGCCAGGAGCTGGACCACGCTCTCAACAATGTGAT
TTCCATG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.69 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.21 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
