RetrogeneDB ID:
retro_ecab_390
Organism:
Horse ( Equus_caballus )
Location:
17:6692888-6693735 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.63 %
Coverage:
99.65 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
TPM3
Parental gene aliases:
No gene alias available
Parental gene description:
tropomyosin 3 [Source:HGNC Symbol;Acc:12012]

Genomic region (view in browser)





>retro_ecab_390
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGGAGCTCAACAAGGAGAATGCCTAGGAT
TGAGTGGAGCAGGCGGAGGCCGATAAGGCGGAGGAGGACAGGAGCAAACAGTTGGAAGAT
GAGCTAGCGTTGCTGCAAAAGAAACTCAAGACCACCAAGATGAACTTGACAAATACTCAG
AGGCTCTCAGAGATGCCCAGGAGAAGCTGGAGCCGGCAGAGCAAAAGGCCACCGACGCCG
AAGCCAATGCGGCCTCTCTGAACAGATGCATCCAACTGCTTGAGGAAGAGCTGGGTCATG
CCCAGGAGTGTCTGGCAACAGCTCTGCAGAAGCTGGAGGAGGCCAAGAAGGCAGCAGATG
AGAGGGAGAGAGGCATGAATGTCATTGAGAGCCGAACCGAAAAGGATGAAAAGAAAATGG
AAATTCAGGAGATCCAACTGTAAGAGGCTAAGCACATGGCTGAAGATGCCAACCGCAATA
TGAAGAGGTGGCCCGTAGGCTGGGCCTTATTGACAGTGACTCGGAATGTGCAGAGGAGTG
GGCTGAGCTCACAGATGGCCAAGTTCGACAGCTGGAAGAACAATTAAGAATAATGGACCA
GACCTTGAAAGTGTTAATGGTTGCAGAAGGTAAGTACTCGCAGAAGGAAGACAAATATGA
GGAAGAGATCAAAGTCCTTTCTGACAAGCTGAGGGAGGCTGAGACTCGGGCTGAATTTGC
AAAGAGGTCAGTAATTAAATTGGAGAAAAGCACTGATGACTTAGAAGAGGAGCTGAACGC
TCAGAAACTGAAGTACAAAGCCATCAGCCAGGAGCTGGACCACGCTCTCAACAATGTGAT
TTCCATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.69
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.21
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGT-EDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEEL
M.AIKKKMQML.L.KENA.D..EQAEA..K..E.RSKQLEDELA..QKKLK.T..DELDKYSEAL.DAQEKLE.AE.KA.DAEA..ASLNR.IQL.EEEL
Retrocopy
MDAIKKKMQMLELNKENA*D*VEQAEAD-KAEEDRSKQLEDELALLQKKLKTT/QDELDKYSEALRDAQEKLEPAEQKATDAEANAASLNRCIQLLEEEL


Parental protein
DRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR-KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELK
..AQE.LATALQKLEEA.KAADE.ERGM.VIE.R..KDE.KME.QEIQL.EAKH.AE.A.R..YEEVAR.L..I..D.E..EE.AEL.......LEE.L.
Retrocopy
GHAQECLATALQKLEEAKKAADERERGMNVIESRTEKDEKKMEIQEIQL*EAKHMAEDANR/QYEEVARRLGLIDSDSECAEEWAELTDGQVRQLEEQLR


Parental protein
NVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI
.....LK.L.....KYSQKEDKYEEEIK.L.DKL.EAETRAEFA.RSV.KLEK..DDLE.EL.AQKLKYKAIS.ELDHALN...S.
Retrocopy
IMDQTLKVLMVAEGKYSQKEDKYEEEIKVLSDKLREAETRAEFAKRSVIKLEKSTDDLEEELNAQKLKYKAISQELDHALNNVISM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide