RetrogeneDB ID:
retro_ecab_391
Organism:
Horse ( Equus_caballus )
Location:
17:24750890-24751512 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.63 %
Coverage:
95.09 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_391
AAAAATTCAACAGAGGGTTTCAACAGCAGACTAGATGAAGTGGAAGAAAGGATCAGTGAA
CTCGAAGACAGGGCAGTAGAATCCATTTAAACAGAGGAGCAAAAAGAAAAAAGAATGAAA
AAGAGTGAATACAGCTTAAGGGACTTATGGGACAACATCAAGTGGACTAATATTCACTTT
GTAGAAGTCCCTGAAGGAGAGGAGAGCTTACGTGAAGAGATAATGGCTGAAAACTTCCCT
AACCTGGGGAAAGTAACAGACATCCAGATCCAGGAAGTCCAGACAGTTACAAATAAGATA
AATCTGACAGACCCACACCAAGACTCATTATACTTAATCTGTCAAAAGTTAAAGGAGAGA
TTATTAACAGTAACAAGAGGAAAACTACTTGTTGCATACAAGGGAACTCCCACAAGACCA
TCAGCAGATTTTTCAGCAGAAATTTTGCAGGTCAGAAGGGAGTGGCATGATATATTCAAA
GTACCGAAACATAAAAACTGCCAGCCAAGAATACTCTACCTGGCCAAGTTTTACTTTAGA
ATTGAAGGAGAGAGAGAGTTTTCCAGAGACGCAAAAGCTGAAGGAGTTCATCACTGGACA
AGCCTTAGAAGAAATGTTAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSSLNGFNSRFKQVEERINLLDDILEEITRAEQKEEKRIRQNENSLRELWDNIKCANIHVIGVPEERQRGRKLFEEIIAEIFPNLRKETDTQVQEAQRVP
K.S..GFNSR...VEERI..L.D...E....E..........E.SLR.LWDNIK..NIH...VPE.......L.EEI.AE.FPNL.K.TD.Q.QE.Q.V.
Retrocopy
KNSTEGFNSRLDEVEERISELEDRAVESI*TEEXXXXXXXXSEYSLRDLWDNIKWTNIHFVEVPEGEE---SLREEIMAENFPNLGKVTDIQIQEVQTVT


Parental protein
NKTSPKRPTSRHIIIKMSKIKDKERILKAARERQQVTYKGKPIRLSVDFSAKTLQVRREWHDIFKV-KEKNLQPRILYPARLSFTMEGEIKSFQ-DKQKL
NK.....P..........K.K..ER.L...R....V.YKG.P.R.S.DFSA..LQVRREWHDIFKV.K.KN.QPRILY.A...F..EGE...F....QKL
Retrocopy
NKINLTDPHQDSLYLICQKLK--ERLLTVTRGKLLVAYKGTPTRPSADFSAEILQVRREWHDIFKVPKHKNCQPRILYLAKFYFRIEGE-REFS\ETQKL


Parental protein
KEFITKKPILQEMLK
KEFIT....L.EMLK
Retrocopy
KEFITGQ-ALEEMLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide