RetrogeneDB ID:
retro_ecab_393
Organism:
Horse ( Equus_caballus )
Location:
17:27352295-27352763 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
90.0 %
Coverage:
54.42 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
NPM1
Parental gene aliases:
No gene alias available
Parental gene description:
nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910]
Genomic region (view in browser)
>retro_ecab_393
ATGGAAGATTCGGTGGACGTGGACATGAGCCCCCTGAAGCCCCAGAACTATCTTTTCGGT
TGTGAACTAAAGGCTGACAAAGATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAG
TTATCATTAAGAACAGTCAGTTTAGGGGCTGATGCAAAGGATGAATTGCATGTTGTTGAA
GCAGAGGCAATGAATTACGAAGGCAGTCCCATTAAAGTAACACTGGCAACTTTGAAAATG
TCTGTGCAGCCAGTGGTTTCCCTTGGGGGCTTTGAAATAACACCACCTGTGGTCTTATGT
GGTTCAGGGCCTGTTCGTATTAGTGGACAGCACTTAGCAGCTGTGGAGGAAGATGCAGAA
TCGGAAGATGGAGTGGAGGAGGATGTGAAACTCCTGAGTATATCTGGAAAGCGTTCTGGC
CCTGGAAGTGGTAGCAAGCTTCCACAGAAAAAAGTAAAACTTGCCGCC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.13 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
