RetrogeneDB ID:
retro_ecab_393
Organism:
Horse ( Equus_caballus )
Location:
17:27352295-27352763 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
90.0 %
Coverage:
54.42 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NPM1
Parental gene aliases:
No gene alias available
Parental gene description:
nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910]

Genomic region (view in browser)





>retro_ecab_393
ATGGAAGATTCGGTGGACGTGGACATGAGCCCCCTGAAGCCCCAGAACTATCTTTTCGGT
TGTGAACTAAAGGCTGACAAAGATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAG
TTATCATTAAGAACAGTCAGTTTAGGGGCTGATGCAAAGGATGAATTGCATGTTGTTGAA
GCAGAGGCAATGAATTACGAAGGCAGTCCCATTAAAGTAACACTGGCAACTTTGAAAATG
TCTGTGCAGCCAGTGGTTTCCCTTGGGGGCTTTGAAATAACACCACCTGTGGTCTTATGT
GGTTCAGGGCCTGTTCGTATTAGTGGACAGCACTTAGCAGCTGTGGAGGAAGATGCAGAA
TCGGAAGATGGAGTGGAGGAGGATGTGAAACTCCTGAGTATATCTGGAAAGCGTTCTGGC
CCTGGAAGTGGTAGCAAGCTTCCACAGAAAAAAGTAAAACTTGCCGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVL
MEDS.D.DMSPL.PQNYLFGCELKADKD.HFKVDNDENEHQLSLRTVSLGA.AKDELH.VEAEAMNYEGSPIKVTLATLKMSVQP.VSLGGFEITPPVVL
Retrocopy
MEDSVDVDMSPLKPQNYLFGCELKADKD-HFKVDNDENEHQLSLRTVSLGADAKDELHVVEAEAMNYEGSPIKVTLATLKMSVQPVVSLGGFEITPPVVL


Parental protein
RLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGSGSKVPQKKVKLAA
...CGSGPV.ISGQHL.AVEEDAESED..EEDVKLLSISGKRS.PGSGSK.PQKKVKLAA
Retrocopy
---CGSGPVRISGQHLAAVEEDAESEDGVEEDVKLLSISGKRSGPGSGSKLPQKKVKLAA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide