RetrogeneDB ID:
retro_ecab_394
Organism:
Horse ( Equus_caballus )
Location:
17:28633062-28633727 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.44 %
Coverage:
92.53 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_394
GAGAGAAAGAACACAATGAATGAGATTTTTTTTAAAAATCTAGAAACTTTAAAAAACAGA
GCTGAAGTTATGGAGGACAGACTTAGTGATTTAGAGGACAGAAATATAGAAATGCAGGTG
GAGAAGGAGCGAGAACTAAGACTTTTAAACAATGAAGAAGTTCTTCAAGAAATATCCAAC
TCAATTAGGAAATGCAACATAAGGATTACAGGTATTCCAGAGAGAGAAAGGAGCAGAGAG
CTTGTTCAAAGAAATAATTAGAACTTCCCAAACCTGGGGAAAGAATTGGACTTACGAGTA
CATGAAGTCAATAGAACTCTTAATTACATCAATGCAAAAGACCTTCTCCAAGGCATATAA
TAGTAAAACTGGCAAAAGTTAATGACAAAGAAAAAATATCAAGAGCAGCAAGGCAGAAGA
AAATAACCTACAAAGGAACCCTTATCAAACTTTCAACAGATTTCTTAGCAGAAACCTTAC
AGGCTAGGAGAGATTGGAATGATATATTCAAAATTCTGAAAGACAAAAACTTTCAGCAAA
GAATACGCTATCCAGCAAAACTATCCTTCAGATACAATAGAGAAATAAAGGCTTTCCCAG
TTTAACAAAAGTTGAGCGAGTTCATCACCACTAGACCTCCCTTAAAAGAAATGAGGAAGG
ATGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EMKNTTLEMK-SSLERLNSRVSDTHEQMSEIDERLEEISQAEQKKEKRIRQNENSLRELWDNIKCTNIRFIGVPEGEERDKEAENRVAENFPNLKKETDI
E.KNT..E.....LE.L..R........S....R..E..Q.E...E.R...NE..L.E....I...NIR..G.PE..ER..E...R...NFPNL.KE.D.
Retrocopy
ERKNTMNEXXXKNLETLKNRAEVMEDRLSDLEDRNIEM-QVEKERELRLLNNEEVLQEISNSIRKCNIRITGIPE-RERSRELVQRNN*NFPNLGKELDL


Parental protein
HIQEAQRTPKKISPK-RATPRHIIIKISKMNDKERIPRAARQKKISYKGTPIRLSVHFSTETLQARRDWNDIFKTLKDKNLQPRILYPAKIFFRYEGEIK
...E..RT...I..K.R..PRHII.K..K.NDKE.I.RAARQKKI.YKGT.I.LS..F..ETLQARRDWNDIFK.LKDKN.Q.RI.YPAK..FRY..EIK
Retrocopy
RVHEVNRTLNYINAK/RPSPRHIIVKLAKVNDKEKISRAARQKKITYKGTLIKLSTDFLAETLQARRDWNDIFKILKDKNFQQRIRYPAKLSFRYNREIK


Parental protein
SFPDNQKLRDFVATSPPLQEILKKA
.FP..QKL..F..T.PPL.E..K.A
Retrocopy
AFPV*QKLSEFITTRPPLKEMRKDA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide