RetrogeneDB ID:
retro_ecab_396
Organism:
Horse ( Equus_caballus )
Location:
17:34730603-34730948 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.9 %
Coverage:
68.24 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S7 [Source:HGNC Symbol;Acc:10440]

Genomic region (view in browser)





>retro_ecab_396
CAGACGCTTCTTTAGCTGGAGCTGAATTCGGACCTTAAGGCCCAGCTGAGGGAGCTGAAC
ATCACGGCAGCCAAGGAAATACAAGTTGGTGGTGGTCGGAAAGCTATTTTCTTTATTCCT
GTTCCTCAACTGAAATCTTTCCAGAAAACCCAAGTCTGGCTAGTACGCGAATTCGAGAAA
AAGTTCAGTGGGAAGCACGTAGTCTTCACTGCTCAGGGGAGAATTCTGCCTAAGCCAACT
CAAAAAACCCGCACAAAAAACAGGCCAAAGCATCCCAGGAGCCGCACTCTGACTGCCATG
CACGATGCGATCCTGGAGGAGTTGATTTTCCCAAAGGAAATTGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA
Q.LL.LE.NSDLKAQLRELNITAAKEI.VGGGRKAI..F.PVPQLKSFQK.QV.LVRE.EKKFSGKHVVF.AQ.RILPKPT.K.RTKN..K.PRSRTLTA
Retrocopy
QTLL*LELNSDLKAQLRELNITAAKEIQVGGGRKAIF-FIPVPQLKSFQKTQVWLVREFEKKFSGKHVVFTAQGRILPKPTQKTRTKNRPKHPRSRTLTA


Parental protein
VHDAILEDLVFPSEIV
.HDAILE.L.FP.EIV
Retrocopy
MHDAILEELIFPKEIV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide