RetrogeneDB ID:
retro_ecab_397
Organism:
Horse ( Equus_caballus )
Location:
17:35126825-35127160 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
74.14 %
Coverage:
92.74 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_397
AGAAGGGTGGCGAGAAGGCCTGCCATCAACGAGATGGGGACCAGAGAATACATCATCAAC
ATGCACAAGCTCAGCCATGGAGTGGGCTTCAAAAAGCATGCCCCATAGGCTTTCAAAGAA
ATTGGAAATTTGCCATGAAGAAGACAGGAACTCCAGAAGTATGCATTGACACCAGGCTCA
ACAAAGCTGCCTGGGCCAAAGGAATAAGGAATGCCCCATACCATATCCATGTGTGGTTGT
CCAGAAAATGTAATGACGATGAAGATTCACCAAACAGACTCTATATGTTGGTTACCTATG
TACCTGTCACCACCTTCAAAAATCTACAGTCAATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.22
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RRVARRRRAAAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIR-KFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYT
RRVARR....AINE..TREY.IN.HK..HGVGFKK.AP.A.KEI..KFAMK..GTP.V.IDTRLNKA.WAKGIRN.PY.I.V.LSRK.N.DEDSPN.LY.
Retrocopy
RRVARR---PAINEMGTREYIINMHKLSHGVGFKKHAP*AFKEIG/KFAMKKTGTPEVCIDTRLNKAAWAKGIRNAPYHIHVWLSRKCNDDEDSPNRLYM


Parental protein
LVTYVPVTTFKNLQTV
LVTYVPVTTFKNLQ..
Retrocopy
LVTYVPVTTFKNLQSM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide