RetrogeneDB ID:
retro_ecab_399
Organism:
Horse ( Equus_caballus )
Location:
17:48296178-48296673 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.72 %
Coverage:
63.46 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
SSR1
Parental gene aliases:
No gene alias available
Parental gene description:
signal sequence receptor, alpha [Source:HGNC Symbol;Acc:11323]

Genomic region (view in browser)





>retro_ecab_399
GATGCTTCATTTCATTATCCTCAGGATCACCAGTTTTATATCCAGAATATCACAGTTCTT
CATCTAAACACCATGGGGCCACTCAAGAGACAGGCAAATGTGAGTCCCCCTTCATTCCTG
CTTGAGAGCCCATGGGTGGATGACCCTGTGATCTAGTCATGAATGTAAATTCAAAGATTT
GAACGGCACTGTATTCCAAGATGCTATCTTCAATCAAACAGTTACAACTAATGAAAGAGA
GGATGTGTTAGATGGGGAAACAATCCTTACACATATGTTTCTTGCTGGTTTTGAGCTACT
AGTTATTGTTGAACTTTACCAACTCCTAGAATTTAGAAATCAAAAGAATTCCACATGGAA
AATAGAAATGAATGCATCAGATCTGAGTGATGCTAATGTGAATTCATTCCTCACAAAGCT
CTGAATCAGATTAATAAAGCTTCACCCAGAAGTCTTCCCAGAAAACAGGCACGGAAGAGA
TGGATGGGATCTGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DASFRYPQDYQFYIQNFTALPLNTVVPPQRQATF-EYSFIPA-EPMGGRPFGLVINLN-YKDLNGNVFQDAVFNQTVTIIEREDGLDGETIFMYMFLAGL
DASF.YPQD.QFYIQN.T.L.LNT..P..RQA...E..FIPA.EPMGG.P..LV.N.N..KDLNG.VFQDA.FNQTVT..ERED.LDGETI...MFLAG.
Retrocopy
DASFHYPQDHQFYIQNITVLHLNTMGPLKRQANV/ESPFIPA*EPMGG*PCDLVMNVN/FKDLNGTVFQDAIFNQTVTTNEREDVLDGETILTHMFLAGF


Parental protein
GLLVVVGLHQLLESRKRKRPIQKVEMGTASQNDVDMS-WIPQETLNQINKASPRRLPRKRAQKRSVGSD
.LLV.V.L.QLLE.R..K....K.EM......D......IP...LNQINKASPR.LPRK.A.KR..GSD
Retrocopy
ELLVIVELYQLLEFRNQKNSTWKIEMNASDLSDANVN/FIPHKALNQINKASPRSLPRKQARKRWMGSD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide