RetrogeneDB ID:
retro_ecab_4
Organism:
Horse ( Equus_caballus )
Location:
X:100652476-100653277 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.91 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_4
ATGCCGAAAGGGAAGAAGGCCAAGGGGAAGAAGGTGGCCCCGGCCCCTGCGGTCGTGAAG
AAGCAGGAGACCAAGAAGGTGGTGAACCCGCTGTTTGAGAAGAGGCCCAAGAATTTCAGC
ATCGGACAGGGCATCCAGCACAAACGGGACGTCACCCGCTTCGTCAAATGGCCGCGCTAC
ATCCGGCTGCAGCAACAGAGGGCGATCCTCTATAAGCGGGTCAAGGTACCTCCCACGATC
AACAAGTTCACCCAGGCCCTGGACCGCCAGATAGCTACTCAGCTGCTCAAGCTAGCCCAC
AAGTACAGACCAGAGACAAAGCAAGAAAAGAAGCAGAGGCTGCTGGCCCGGGCTGAGAAG
AAGGCTGCTGGCAAAGGGGATGTCCCCACTAAGAGGCCACCGGTCCTTCGAGCAGGGGTC
AATACTGTCACCACCTTGATGGAGAACAAGAAGGCTCAGCTGGTAGTGATCGCACACGAC
GTGGATCCCATCGAGCTGGTCGTCTTCCTTCCTGCCCTGTGTCGGAAGATGGGGGTGCCC
TACTGCATCATCAAGGCCAAGGCCCGGCTGGGGCGTCTGGTCCACAGGAAGACCTGTACC
ACCGTCGCTGTCACACAAGTCAACTCGGAAGACAAAGGAGCTCTGGCTAAGCTGGTGGAA
GCTATCAGGACCAACTACAACGACAGATACGACGAGATCGGCCGTTACTGGGGAGGCAAC
GTCTTGGGTCCAAAATCGGTGGCTCGCATCACCAAGCTGGAGATGGCAAAGGCTAAAGAA
CTGGCCACCAAGCTGGGCTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 227.01
SRP021940_cerebellum 62.13
SRP021940_embryo 177.59
SRP021940_placental_villous 85.49
SRP021940_synovial_membrane 139.92
SRP021940_testis 58.98

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FEKRPRNFGLRQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK
FEKRP.NF...Q.IQ.KRD.TRFVKWPRYIRLQ.QRAILYKR.KVPP.IN.FTQALDRQ.ATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK
Retrocopy
FEKRPKNFSIGQGIQHKRDVTRFVKWPRYIRLQQQRAILYKRVKVPPTINKFTQALDRQIATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK


Parental protein
RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYD
RPPVLRAGVNTVTTL.ENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIK.KARLGRLVHRKTCTTVA.TQVNSEDKGALAKLVEAIRTNYNDRYD
Retrocopy
RPPVLRAGVNTVTTLMENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKAKARLGRLVHRKTCTTVAVTQVNSEDKGALAKLVEAIRTNYNDRYD


Parental protein
EIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG
EI.R.WGGNVLGPKSVARI.KLE.AKAKELATKLG
Retrocopy
EIGRYWGGNVLGPKSVARITKLEMAKAKELATKLG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide