RetrogeneDB ID:
retro_ecab_400
Organism:
Horse ( Equus_caballus )
Location:
17:60137129-60137819 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
UCHL3
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12515]

Genomic region (view in browser)





>retro_ecab_400
ATGGAGGGTCAGCGCTGGCTCCCGTTGGAGGCCAATCCCGAGGTCACCAACCAGTTTCTC
AAACAATTAGGTCTACATCCTAACTGGCAGTTTGTTGATGTATATGGAATGGATCCTGAA
CTCCTTAGCATGGTTCCACGGCCAGTGTGCGCAGTGTTACTTCTCTTCCCTATTACAGAA
AAGTATGAAGTATTCAGAACAGAAGAGGAGGAAAAAATAAAATCTCAGGGACAAGATGTT
ACATCATCAGTATATTTCATGAAGCAAACAATCAGCAATGCCTGTGGAACAATTGGACTG
ATCCATGCTATTGCCAACAATAAAGACAAGATGCACTTTGAATCTGGATCAACCTTGAAA
AAATTCCTGGAGGAGTCTGTGTCCATGAGCCCTGAAGAACGAGCCAGATACCTGGAGAAC
TATGACGCTATTCGAGTTACTCACGAGACCAGTGCCCATGAAGGTCAGACTGAGGCCCCG
AGTCCAGATGAAAAGGTAGACCTTCATTTCATTGCGTTAGTTCACGTGGATGGGCATCTC
TATGAATTAGATGGACGGAAACCATTTCCAATTAATCACGGGGAAACTAGTGATGAAACT
TTATTAGAGGATGCCATAGAAGTTTGCAAGAAGTTTATGGAACGTGACCCTGATGAATTA
AGATTCAATGCAATTGCTCTTTCTGCAGCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.17
SRP021940_placental_villous 0.49
SRP021940_synovial_membrane 0.16
SRP021940_testis 0.47

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGL
MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGL
Retrocopy
MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGL


Parental protein
IHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSPDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDET
IHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSPDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDET
Retrocopy
IHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSPDEKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDET


Parental protein
LLEDAIEVCKKFMERDPDELRFNAIALSAA
LLEDAIEVCKKFMERDPDELRFNAIALSAA
Retrocopy
LLEDAIEVCKKFMERDPDELRFNAIALSAA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide