RetrogeneDB ID:
retro_ecab_401
Organism:
Horse ( Equus_caballus )
Location:
17:65270341-65270807 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.35 %
Coverage:
57.04 %
Frameshifts:
5
Stop codons:
3


Parental gene:
Parental gene symbol:
MEMO1
Parental gene aliases:
No gene alias available
Parental gene description:
mediator of cell motility 1 [Source:HGNC Symbol;Acc:14014]

Genomic region (view in browser)





>retro_ecab_401
ATTGAAGTGCATTTGCTTATTCAGCTAAAGCCATGGGAAGATACAAGGATGGATTTACCA
TTATTCCTGAACTGGGTAGAGTTCAGGGTGAATCAAAAGAGTAGAATTTGGTGAGACTCT
TCAGTAAATCTCTGGAGATCCTAATAATCTCTTTGGGATTTCTTCTGATATCTACCACTG
GGGTCAAACGTTCCTTACAGTTATAAGCGTGAAACCTAGGGGGAGAGTTATAGATTCATT
GGACATCTAGGTAAAATGGATAATGATATTATGGAAGAATTAGGCTCTGTATCTTTTAGC
ACTTACTTAGAAACATACCAAATATAACTTGTGGAAGACATCCCATTAGGATGTTATTAA
ATGTTACGGAGTTCTAGAAGAATGGGATGAATATGAGCTTCACTTTCTTGAATTATGCCA
GGCAAGTCCATGTAGAAACTGGCAAGACAGTTCTGTAAGTTGTGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IEMHL-PYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYL-ADPSNLFVVSSDFCHWGQRF-RYSYYDESQGEIYRSIEHLDKMGMSIIEQLDP
IE.HL..Y.AKAM...KD.FTIIP.L.....ESKE.....LFSK.L..DP.NLF..SSD..HWGQ.F..YSY..E..GE.YR.I.HL.KM...I.E.L..
Retrocopy
IEVHL/AYSAKAMGRYKDGFTIIPELGRVQGESKE*NLVRLFSKSL/GDPNNLFGISSDIYHWGQTF/PYSYKRET*GESYRFIGHLGKMDNDIMEELGS


Parental protein
VSFSNYLKKYH-NTICGRHPIGVLLNAITELQKNGMNMSFSFLNYA-QSSQCRNWQDSSVSYA
VSFS.YL..Y..N..CGRHPI..LLN..TE..KNGMNMSF.FLNYA.Q.S.CRNWQDSSVS.A
Retrocopy
VSFSTYLETYQ/NITCGRHPIRMLLN-VTEF*KNGMNMSFTFLNYA/QASPCRNWQDSSVSCA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide